Experiment: DinoMM minimal media with L-Histidine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1916 and HP15_1917 are separated by 0 nucleotides HP15_1917 and HP15_1918 overlap by 4 nucleotides
HP15_1916: HP15_1916 - O-antigen polymerase, at 2,030,965 to 2,032,335
_1916
HP15_1917: HP15_1917 - glycosyl transferase, family 2, at 2,032,336 to 2,033,511
_1917
HP15_1918: HP15_1918 - PEP-CTERM system-associated, FemAB-related protein, at 2,033,508 to 2,034,569
_1918
Position (kb)
2032
2033
2034 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2031.418 kb on + strand, within HP15_1916 at 2031.438 kb on + strand, within HP15_1916 at 2031.600 kb on - strand, within HP15_1916 at 2031.607 kb on - strand, within HP15_1916 at 2031.607 kb on - strand, within HP15_1916 at 2031.698 kb on - strand, within HP15_1916 at 2031.698 kb on - strand, within HP15_1916 at 2031.798 kb on - strand, within HP15_1916 at 2031.798 kb on - strand, within HP15_1916 at 2031.848 kb on + strand, within HP15_1916 at 2031.913 kb on + strand, within HP15_1916 at 2031.913 kb on - strand, within HP15_1916 at 2032.163 kb on + strand, within HP15_1916 at 2032.356 kb on + strand at 2032.366 kb on + strand at 2032.366 kb on + strand at 2032.366 kb on + strand at 2032.397 kb on + strand at 2032.509 kb on + strand, within HP15_1917 at 2032.517 kb on - strand, within HP15_1917 at 2032.517 kb on - strand, within HP15_1917 at 2032.693 kb on - strand, within HP15_1917 at 2033.160 kb on - strand, within HP15_1917 at 2033.210 kb on - strand, within HP15_1917 at 2033.380 kb on + strand, within HP15_1917 at 2033.389 kb on - strand, within HP15_1917 at 2033.389 kb on - strand, within HP15_1917 at 2033.685 kb on - strand, within HP15_1918 at 2033.876 kb on - strand, within HP15_1918 at 2033.877 kb on + strand, within HP15_1918 at 2033.936 kb on + strand, within HP15_1918 at 2033.944 kb on - strand, within HP15_1918 at 2034.036 kb on - strand, within HP15_1918 at 2034.176 kb on - strand, within HP15_1918 at 2034.426 kb on + strand, within HP15_1918 at 2034.434 kb on - strand, within HP15_1918
Per-strain Table
Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Histidine remove 2,031,418 + HP15_1916 0.33 -1.0 2,031,438 + HP15_1916 0.35 +0.6 2,031,600 - HP15_1916 0.46 -0.4 2,031,607 - HP15_1916 0.47 -0.3 2,031,607 - HP15_1916 0.47 +0.1 2,031,698 - HP15_1916 0.53 -2.7 2,031,698 - HP15_1916 0.53 +0.1 2,031,798 - HP15_1916 0.61 -1.0 2,031,798 - HP15_1916 0.61 +1.5 2,031,848 + HP15_1916 0.64 -1.5 2,031,913 + HP15_1916 0.69 +0.3 2,031,913 - HP15_1916 0.69 -0.5 2,032,163 + HP15_1916 0.87 -0.3 2,032,356 + +0.5 2,032,366 + +0.5 2,032,366 + -0.2 2,032,366 + -0.6 2,032,397 + +0.2 2,032,509 + HP15_1917 0.15 -1.4 2,032,517 - HP15_1917 0.15 -0.6 2,032,517 - HP15_1917 0.15 +1.9 2,032,693 - HP15_1917 0.30 -1.5 2,033,160 - HP15_1917 0.70 -1.2 2,033,210 - HP15_1917 0.74 -0.7 2,033,380 + HP15_1917 0.89 -1.1 2,033,389 - HP15_1917 0.90 +0.1 2,033,389 - HP15_1917 0.90 +0.9 2,033,685 - HP15_1918 0.17 +3.5 2,033,876 - HP15_1918 0.35 +0.0 2,033,877 + HP15_1918 0.35 -0.2 2,033,936 + HP15_1918 0.40 -0.5 2,033,944 - HP15_1918 0.41 -0.4 2,034,036 - HP15_1918 0.50 -0.8 2,034,176 - HP15_1918 0.63 -0.1 2,034,426 + HP15_1918 0.86 +0.7 2,034,434 - HP15_1918 0.87 -0.1
Or see this region's nucleotide sequence