Experiment: DinoMM minimal media with L-Histidine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1220 and HP15_1221 are separated by 56 nucleotides HP15_1221 and HP15_1222 are separated by 19 nucleotides HP15_1222 and HP15_1223 are separated by 24 nucleotides
HP15_1220: HP15_1220 - acetyltransferase, GNAT family, at 1,268,745 to 1,271,489
_1220
HP15_1221: HP15_1221 - recombination-associated protein rdgC, at 1,271,546 to 1,272,472
_1221
HP15_1222: HP15_1222 - conserved hypothetical protein, membrane, at 1,272,492 to 1,272,692
_1222
HP15_1223: HP15_1223 - protein YaaA, at 1,272,717 to 1,273,487
_1223
Position (kb)
1271
1272
1273 Strain fitness (log2 ratio)
-1
0
1
2 at 1270.619 kb on + strand, within HP15_1220 at 1270.668 kb on + strand, within HP15_1220 at 1270.676 kb on - strand, within HP15_1220 at 1270.726 kb on + strand, within HP15_1220 at 1270.748 kb on - strand, within HP15_1220 at 1270.757 kb on + strand, within HP15_1220 at 1270.813 kb on + strand, within HP15_1220 at 1271.174 kb on + strand, within HP15_1220 at 1271.303 kb on + strand at 1271.535 kb on + strand at 1271.551 kb on - strand at 1271.586 kb on + strand at 1271.597 kb on - strand at 1271.617 kb on + strand at 1271.681 kb on + strand, within HP15_1221 at 1271.751 kb on - strand, within HP15_1221 at 1271.959 kb on - strand, within HP15_1221 at 1272.006 kb on + strand, within HP15_1221 at 1272.026 kb on - strand, within HP15_1221 at 1272.064 kb on + strand, within HP15_1221 at 1272.072 kb on - strand, within HP15_1221 at 1272.191 kb on - strand, within HP15_1221 at 1272.215 kb on - strand, within HP15_1221 at 1272.376 kb on + strand, within HP15_1221 at 1272.556 kb on + strand, within HP15_1222 at 1272.557 kb on + strand, within HP15_1222 at 1272.774 kb on + strand at 1272.796 kb on + strand, within HP15_1223 at 1272.815 kb on + strand, within HP15_1223 at 1272.823 kb on - strand, within HP15_1223 at 1272.883 kb on + strand, within HP15_1223 at 1272.985 kb on - strand, within HP15_1223
Per-strain Table
Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Histidine remove 1,270,619 + HP15_1220 0.68 -0.4 1,270,668 + HP15_1220 0.70 -0.7 1,270,676 - HP15_1220 0.70 -0.5 1,270,726 + HP15_1220 0.72 -0.2 1,270,748 - HP15_1220 0.73 -0.3 1,270,757 + HP15_1220 0.73 +0.2 1,270,813 + HP15_1220 0.75 -0.8 1,271,174 + HP15_1220 0.88 +1.3 1,271,303 + -0.1 1,271,535 + -0.1 1,271,551 - -0.3 1,271,586 + +2.4 1,271,597 - -0.2 1,271,617 + +0.3 1,271,681 + HP15_1221 0.15 +0.9 1,271,751 - HP15_1221 0.22 +0.3 1,271,959 - HP15_1221 0.45 -0.9 1,272,006 + HP15_1221 0.50 +0.4 1,272,026 - HP15_1221 0.52 -0.6 1,272,064 + HP15_1221 0.56 +0.6 1,272,072 - HP15_1221 0.57 +1.6 1,272,191 - HP15_1221 0.70 +0.3 1,272,215 - HP15_1221 0.72 -0.2 1,272,376 + HP15_1221 0.90 -1.1 1,272,556 + HP15_1222 0.32 +0.1 1,272,557 + HP15_1222 0.32 -0.4 1,272,774 + +1.1 1,272,796 + HP15_1223 0.10 +1.5 1,272,815 + HP15_1223 0.13 -0.3 1,272,823 - HP15_1223 0.14 -0.6 1,272,883 + HP15_1223 0.22 -1.0 1,272,985 - HP15_1223 0.35 -0.1
Or see this region's nucleotide sequence