Strain Fitness in Marinobacter adhaerens HP15 around HP15_1212

Experiment: DinoMM minimal media with L-Histidine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1211 and HP15_1212 are separated by 64 nucleotidesHP15_1212 and HP15_1213 are separated by 331 nucleotides HP15_1211: HP15_1211 - protease III precursor, at 1,256,734 to 1,259,556 _1211 HP15_1212: HP15_1212 - conserved hypothetical protein, at 1,259,621 to 1,259,920 _1212 HP15_1213: HP15_1213 - short chain dehydrogenase, at 1,260,252 to 1,262,291 _1213 Position (kb) 1259 1260Strain fitness (log2 ratio) -1 0 1at 1259.334 kb on + strandat 1259.361 kb on - strandat 1259.381 kb on + strandat 1259.680 kb on + strand, within HP15_1212at 1259.870 kb on + strand, within HP15_1212at 1259.870 kb on + strand, within HP15_1212at 1259.878 kb on - strand, within HP15_1212at 1259.915 kb on + strandat 1260.018 kb on + strandat 1260.284 kb on - strandat 1260.374 kb on + strandat 1260.403 kb on + strandat 1260.413 kb on + strandat 1260.701 kb on + strand, within HP15_1213at 1260.701 kb on + strand, within HP15_1213at 1260.709 kb on - strand, within HP15_1213at 1260.709 kb on - strand, within HP15_1213at 1260.754 kb on + strand, within HP15_1213at 1260.887 kb on + strand, within HP15_1213

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Per-strain Table

Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Histidine
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1,259,334 + +0.6
1,259,361 - -0.6
1,259,381 + -0.2
1,259,680 + HP15_1212 0.20 -0.6
1,259,870 + HP15_1212 0.83 -1.4
1,259,870 + HP15_1212 0.83 -1.7
1,259,878 - HP15_1212 0.86 +1.1
1,259,915 + -0.2
1,260,018 + -0.3
1,260,284 - -1.0
1,260,374 + +1.5
1,260,403 + -1.3
1,260,413 + +0.2
1,260,701 + HP15_1213 0.22 +0.9
1,260,701 + HP15_1213 0.22 -0.0
1,260,709 - HP15_1213 0.22 -0.3
1,260,709 - HP15_1213 0.22 +0.6
1,260,754 + HP15_1213 0.25 +0.5
1,260,887 + HP15_1213 0.31 -0.4

Or see this region's nucleotide sequence