Strain Fitness in Marinobacter adhaerens HP15 around HP15_1208

Experiment: DinoMM minimal media with L-Histidine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1207 and HP15_1208 are separated by 11 nucleotides HP15_1207: HP15_1207 - conserved hypothetical protein, at 1,250,300 to 1,251,667 _1207 HP15_1208: HP15_1208 - conserved hypothetical protein, at 1,251,679 to 1,253,907 _1208 Position (kb) 1251 1252 1253 1254Strain fitness (log2 ratio) -2 -1 0 1 2at 1250.735 kb on - strand, within HP15_1207at 1250.764 kb on + strand, within HP15_1207at 1250.991 kb on + strand, within HP15_1207at 1250.991 kb on + strand, within HP15_1207at 1250.999 kb on - strand, within HP15_1207at 1251.048 kb on + strand, within HP15_1207at 1251.166 kb on + strand, within HP15_1207at 1251.174 kb on - strand, within HP15_1207at 1251.179 kb on + strand, within HP15_1207at 1251.179 kb on + strand, within HP15_1207at 1251.179 kb on - strand, within HP15_1207at 1251.187 kb on - strand, within HP15_1207at 1251.187 kb on - strand, within HP15_1207at 1251.287 kb on - strand, within HP15_1207at 1251.287 kb on - strand, within HP15_1207at 1251.358 kb on + strand, within HP15_1207at 1251.366 kb on - strand, within HP15_1207at 1251.368 kb on + strand, within HP15_1207at 1251.585 kb on + strandat 1251.589 kb on - strandat 1251.612 kb on - strandat 1251.855 kb on - strandat 1251.863 kb on - strandat 1251.871 kb on - strandat 1251.871 kb on - strandat 1252.215 kb on + strand, within HP15_1208at 1252.228 kb on - strand, within HP15_1208at 1252.284 kb on - strand, within HP15_1208at 1252.301 kb on - strand, within HP15_1208at 1252.325 kb on + strand, within HP15_1208at 1252.447 kb on + strand, within HP15_1208at 1252.455 kb on - strand, within HP15_1208at 1252.625 kb on + strand, within HP15_1208at 1252.698 kb on + strand, within HP15_1208at 1252.708 kb on + strand, within HP15_1208at 1252.716 kb on - strand, within HP15_1208at 1253.059 kb on - strand, within HP15_1208at 1253.093 kb on + strand, within HP15_1208at 1253.147 kb on - strand, within HP15_1208at 1253.256 kb on - strand, within HP15_1208at 1253.311 kb on - strand, within HP15_1208at 1253.324 kb on + strand, within HP15_1208at 1253.431 kb on + strand, within HP15_1208at 1253.469 kb on + strand, within HP15_1208at 1253.477 kb on - strand, within HP15_1208at 1253.721 kb on - strandat 1253.771 kb on + strandat 1253.916 kb on + strandat 1254.019 kb on + strandat 1254.076 kb on - strandat 1254.213 kb on - strandat 1254.219 kb on - strandat 1254.224 kb on - strandat 1254.245 kb on + strandat 1254.253 kb on - strandat 1254.291 kb on + strandat 1254.305 kb on - strandat 1254.369 kb on + strandat 1254.378 kb on - strandat 1254.378 kb on - strandat 1254.412 kb on - strandat 1254.448 kb on - strandat 1254.601 kb on + strandat 1254.663 kb on + strandat 1254.762 kb on - strandat 1254.873 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Histidine
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1,250,735 - HP15_1207 0.32 +1.7
1,250,764 + HP15_1207 0.34 +1.5
1,250,991 + HP15_1207 0.51 +0.8
1,250,991 + HP15_1207 0.51 -0.4
1,250,999 - HP15_1207 0.51 -1.6
1,251,048 + HP15_1207 0.55 +1.7
1,251,166 + HP15_1207 0.63 -0.2
1,251,174 - HP15_1207 0.64 +0.8
1,251,179 + HP15_1207 0.64 -0.7
1,251,179 + HP15_1207 0.64 +0.4
1,251,179 - HP15_1207 0.64 +0.3
1,251,187 - HP15_1207 0.65 +0.4
1,251,187 - HP15_1207 0.65 +1.0
1,251,287 - HP15_1207 0.72 -0.4
1,251,287 - HP15_1207 0.72 +0.1
1,251,358 + HP15_1207 0.77 +0.2
1,251,366 - HP15_1207 0.78 -0.3
1,251,368 + HP15_1207 0.78 +0.8
1,251,585 + +0.7
1,251,589 - -0.8
1,251,612 - -1.0
1,251,855 - -0.1
1,251,863 - -0.2
1,251,871 - +0.5
1,251,871 - -0.1
1,252,215 + HP15_1208 0.24 +0.3
1,252,228 - HP15_1208 0.25 -1.3
1,252,284 - HP15_1208 0.27 +0.6
1,252,301 - HP15_1208 0.28 +1.2
1,252,325 + HP15_1208 0.29 -0.4
1,252,447 + HP15_1208 0.34 -0.6
1,252,455 - HP15_1208 0.35 -0.1
1,252,625 + HP15_1208 0.42 +0.6
1,252,698 + HP15_1208 0.46 +0.6
1,252,708 + HP15_1208 0.46 +0.5
1,252,716 - HP15_1208 0.47 -0.2
1,253,059 - HP15_1208 0.62 +0.3
1,253,093 + HP15_1208 0.63 +1.9
1,253,147 - HP15_1208 0.66 +1.9
1,253,256 - HP15_1208 0.71 +0.6
1,253,311 - HP15_1208 0.73 +0.5
1,253,324 + HP15_1208 0.74 -0.2
1,253,431 + HP15_1208 0.79 +0.7
1,253,469 + HP15_1208 0.80 -0.4
1,253,477 - HP15_1208 0.81 -0.6
1,253,721 - +0.9
1,253,771 + +1.1
1,253,916 + -0.4
1,254,019 + -0.1
1,254,076 - -1.0
1,254,213 - -0.0
1,254,219 - +0.7
1,254,224 - -1.5
1,254,245 + -1.0
1,254,253 - +0.7
1,254,291 + +0.6
1,254,305 - +0.4
1,254,369 + -1.9
1,254,378 - +0.3
1,254,378 - +0.2
1,254,412 - -0.9
1,254,448 - -0.7
1,254,601 + -0.7
1,254,663 + +0.0
1,254,762 - -0.1
1,254,873 + +1.1

Or see this region's nucleotide sequence