Experiment: DinoMM minimal media with L-Histidine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1207 and HP15_1208 are separated by 11 nucleotides
HP15_1207: HP15_1207 - conserved hypothetical protein, at 1,250,300 to 1,251,667
_1207
HP15_1208: HP15_1208 - conserved hypothetical protein, at 1,251,679 to 1,253,907
_1208
Position (kb)
1251
1252
1253
1254 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1250.735 kb on - strand, within HP15_1207 at 1250.764 kb on + strand, within HP15_1207 at 1250.991 kb on + strand, within HP15_1207 at 1250.991 kb on + strand, within HP15_1207 at 1250.999 kb on - strand, within HP15_1207 at 1251.048 kb on + strand, within HP15_1207 at 1251.166 kb on + strand, within HP15_1207 at 1251.174 kb on - strand, within HP15_1207 at 1251.179 kb on + strand, within HP15_1207 at 1251.179 kb on + strand, within HP15_1207 at 1251.179 kb on - strand, within HP15_1207 at 1251.187 kb on - strand, within HP15_1207 at 1251.187 kb on - strand, within HP15_1207 at 1251.287 kb on - strand, within HP15_1207 at 1251.287 kb on - strand, within HP15_1207 at 1251.358 kb on + strand, within HP15_1207 at 1251.366 kb on - strand, within HP15_1207 at 1251.368 kb on + strand, within HP15_1207 at 1251.585 kb on + strand at 1251.589 kb on - strand at 1251.612 kb on - strand at 1251.855 kb on - strand at 1251.863 kb on - strand at 1251.871 kb on - strand at 1251.871 kb on - strand at 1252.215 kb on + strand, within HP15_1208 at 1252.228 kb on - strand, within HP15_1208 at 1252.284 kb on - strand, within HP15_1208 at 1252.301 kb on - strand, within HP15_1208 at 1252.325 kb on + strand, within HP15_1208 at 1252.447 kb on + strand, within HP15_1208 at 1252.455 kb on - strand, within HP15_1208 at 1252.625 kb on + strand, within HP15_1208 at 1252.698 kb on + strand, within HP15_1208 at 1252.708 kb on + strand, within HP15_1208 at 1252.716 kb on - strand, within HP15_1208 at 1253.059 kb on - strand, within HP15_1208 at 1253.093 kb on + strand, within HP15_1208 at 1253.147 kb on - strand, within HP15_1208 at 1253.256 kb on - strand, within HP15_1208 at 1253.311 kb on - strand, within HP15_1208 at 1253.324 kb on + strand, within HP15_1208 at 1253.431 kb on + strand, within HP15_1208 at 1253.469 kb on + strand, within HP15_1208 at 1253.477 kb on - strand, within HP15_1208 at 1253.721 kb on - strand at 1253.771 kb on + strand at 1253.916 kb on + strand at 1254.019 kb on + strand at 1254.076 kb on - strand at 1254.213 kb on - strand at 1254.219 kb on - strand at 1254.224 kb on - strand at 1254.245 kb on + strand at 1254.253 kb on - strand at 1254.291 kb on + strand at 1254.305 kb on - strand at 1254.369 kb on + strand at 1254.378 kb on - strand at 1254.378 kb on - strand at 1254.412 kb on - strand at 1254.448 kb on - strand at 1254.601 kb on + strand at 1254.663 kb on + strand at 1254.762 kb on - strand at 1254.873 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Histidine remove 1,250,735 - HP15_1207 0.32 +1.7 1,250,764 + HP15_1207 0.34 +1.5 1,250,991 + HP15_1207 0.51 +0.8 1,250,991 + HP15_1207 0.51 -0.4 1,250,999 - HP15_1207 0.51 -1.6 1,251,048 + HP15_1207 0.55 +1.7 1,251,166 + HP15_1207 0.63 -0.2 1,251,174 - HP15_1207 0.64 +0.8 1,251,179 + HP15_1207 0.64 -0.7 1,251,179 + HP15_1207 0.64 +0.4 1,251,179 - HP15_1207 0.64 +0.3 1,251,187 - HP15_1207 0.65 +0.4 1,251,187 - HP15_1207 0.65 +1.0 1,251,287 - HP15_1207 0.72 -0.4 1,251,287 - HP15_1207 0.72 +0.1 1,251,358 + HP15_1207 0.77 +0.2 1,251,366 - HP15_1207 0.78 -0.3 1,251,368 + HP15_1207 0.78 +0.8 1,251,585 + +0.7 1,251,589 - -0.8 1,251,612 - -1.0 1,251,855 - -0.1 1,251,863 - -0.2 1,251,871 - +0.5 1,251,871 - -0.1 1,252,215 + HP15_1208 0.24 +0.3 1,252,228 - HP15_1208 0.25 -1.3 1,252,284 - HP15_1208 0.27 +0.6 1,252,301 - HP15_1208 0.28 +1.2 1,252,325 + HP15_1208 0.29 -0.4 1,252,447 + HP15_1208 0.34 -0.6 1,252,455 - HP15_1208 0.35 -0.1 1,252,625 + HP15_1208 0.42 +0.6 1,252,698 + HP15_1208 0.46 +0.6 1,252,708 + HP15_1208 0.46 +0.5 1,252,716 - HP15_1208 0.47 -0.2 1,253,059 - HP15_1208 0.62 +0.3 1,253,093 + HP15_1208 0.63 +1.9 1,253,147 - HP15_1208 0.66 +1.9 1,253,256 - HP15_1208 0.71 +0.6 1,253,311 - HP15_1208 0.73 +0.5 1,253,324 + HP15_1208 0.74 -0.2 1,253,431 + HP15_1208 0.79 +0.7 1,253,469 + HP15_1208 0.80 -0.4 1,253,477 - HP15_1208 0.81 -0.6 1,253,721 - +0.9 1,253,771 + +1.1 1,253,916 + -0.4 1,254,019 + -0.1 1,254,076 - -1.0 1,254,213 - -0.0 1,254,219 - +0.7 1,254,224 - -1.5 1,254,245 + -1.0 1,254,253 - +0.7 1,254,291 + +0.6 1,254,305 - +0.4 1,254,369 + -1.9 1,254,378 - +0.3 1,254,378 - +0.2 1,254,412 - -0.9 1,254,448 - -0.7 1,254,601 + -0.7 1,254,663 + +0.0 1,254,762 - -0.1 1,254,873 + +1.1
Or see this region's nucleotide sequence