Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS20085

Experiment: diet=StandardDiet; sample=FecalPellet; mouse5; day4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	diet=StandardDiet; sample=FecalPellet; mouse5; day4
2,306,305	-		BBR_RS20080	0.56	+1.6
2,306,353	-		BBR_RS20080	0.60	+4.0
2,306,353	-		BBR_RS20080	0.60	+2.8
2,306,353	-		BBR_RS20080	0.60	+4.5
2,306,354	-		BBR_RS20080	0.60	+1.9
2,306,354	-		BBR_RS20080	0.60	+1.7
2,306,354	-		BBR_RS20080	0.60	+2.0
2,306,384	-		BBR_RS20080	0.62	+2.4
2,306,394	-		BBR_RS20080	0.63	+0.2
2,306,396	-		BBR_RS20080	0.63	+0.2
2,306,445	-		BBR_RS20080	0.67	+0.9
2,306,450	-		BBR_RS20080	0.67	+2.2
2,306,479	-		BBR_RS20080	0.69	+1.6
2,306,517	+		BBR_RS20080	0.72	+0.8
2,306,529	+		BBR_RS20080	0.73	+4.1
2,306,532	-		BBR_RS20080	0.73	+2.7
2,306,542	+		BBR_RS20080	0.74	-0.1
2,306,557	-		BBR_RS20080	0.75	+2.8
2,306,579	+		BBR_RS20080	0.76	+4.0
2,306,585	-		BBR_RS20080	0.77	+0.3
2,306,585	-		BBR_RS20080	0.77	+0.2
2,306,604	-		BBR_RS20080	0.78	+1.5
2,306,609	-		BBR_RS20080	0.79	+0.9
2,306,609	-		BBR_RS20080	0.79	+0.7
2,306,609	-		BBR_RS20080	0.79	+1.2
2,306,615	+		BBR_RS20080	0.79	+0.2
2,306,615	+		BBR_RS20080	0.79	+1.4
2,306,641	-		BBR_RS20080	0.81	+2.9
2,306,651	-		BBR_RS20080	0.82	+2.4
2,306,651	-		BBR_RS20080	0.82	-0.1
2,306,651	-		BBR_RS20080	0.82	+1.5
2,306,651	-		BBR_RS20080	0.82	+0.3
2,306,651	-		BBR_RS20080	0.82	+0.1
2,306,666	+		BBR_RS20080	0.83	+0.9
2,306,672	+		BBR_RS20080	0.83	-0.3
2,306,672	+		BBR_RS20080	0.83	-1.6
2,306,673	-		BBR_RS20080	0.83	+0.3
2,306,673	-		BBR_RS20080	0.83	+1.1
2,306,673	-		BBR_RS20080	0.83	-0.6
2,306,674	-		BBR_RS20080	0.84	+0.7
2,306,674	-		BBR_RS20080	0.84	+0.8
2,306,674	-		BBR_RS20080	0.84	+0.3
2,306,680	-		BBR_RS20080	0.84	+0.1
2,306,695	-		BBR_RS20080	0.85	+0.6
2,306,695	-		BBR_RS20080	0.85	-1.5
2,306,695	-		BBR_RS20080	0.85	+1.3
2,306,697	-		BBR_RS20080	0.85	+1.5
2,306,698	+		BBR_RS20080	0.85	+3.0
2,306,698	+		BBR_RS20080	0.85	-0.0
2,306,699	+		BBR_RS20080	0.85	+0.9
2,306,702	-		BBR_RS20080	0.86	-1.3
2,306,706	-		BBR_RS20080	0.86	-1.3
2,306,713	-		BBR_RS20080	0.86	+3.5
2,306,718	-		BBR_RS20080	0.87	+1.8
2,306,718	-		BBR_RS20080	0.87	+1.9
2,306,718	-		BBR_RS20080	0.87	+1.5
2,306,725	-		BBR_RS20080	0.87	+0.7
2,306,757	-		BBR_RS20080	0.90	+0.9
2,306,769	-				+3.4
2,306,769	-				+2.4
2,306,770	-				-0.0
2,306,770	-				+1.0
2,306,770	-				+0.7
2,306,826	+				+1.6
2,306,844	-				+3.8
2,306,870	-				+4.2
2,306,904	+				+1.0
2,306,910	+				+3.0
2,306,929	+				+1.2
2,306,937	-				+1.5
2,306,937	-				-0.9
2,306,937	-				-0.6
2,306,951	-				+0.8
2,306,952	-				+1.7
2,306,965	-				+3.1
2,306,969	+				+4.2
2,306,969	+				+1.0
2,306,969	-				-1.6
2,306,977	-				+0.7
2,306,977	-				-0.1
2,306,977	-				+3.1
2,307,002	+				+1.4
2,307,030	-				-2.4
2,307,078	-				-1.8
2,307,154	-				+1.5
2,307,156	-				+1.5
2,307,205	+				+2.0
2,307,205	+				+1.0
2,307,205	+				+1.6
2,307,205	-				-0.0
2,307,207	-				-0.7
2,307,207	-				-0.7
2,307,207	-				+1.0
2,307,222	+				+1.7
2,307,222	+				+3.4
2,307,222	+				-1.1
2,307,222	+				-0.4
2,307,222	+				+0.2
2,307,263	+				-0.8
2,307,271	-				-0.1
2,307,271	-				+1.2
2,307,271	-				+0.8
2,307,283	+				+0.1
2,307,287	+				+0.5
2,307,288	+				-2.5
2,307,288	+				+0.1
2,307,291	-				-1.5
2,307,291	-				-1.0
2,307,293	+				-1.7
2,307,296	-				-1.5
2,307,296	-				+2.0
2,307,296	-				+0.4
2,307,321	+				+0.0
2,307,325	+				-2.4
2,307,327	+				-2.2
2,307,329	-				-1.5
2,307,329	-				-1.2
2,307,329	-				-1.5
2,307,329	-				-1.2
2,307,329	-				-1.2
2,307,329	-				-2.1
2,307,332	+				-0.3
2,307,332	+				-1.0
2,307,333	-				-1.8
2,307,337	+				-2.1
2,307,337	+				-0.6
2,307,337	+				+1.0
2,307,340	-				-0.4
2,307,340	-				+0.1
2,307,340	-				-2.1
2,307,346	+				+0.3
2,307,354	+				-3.0
2,307,354	+				-1.3
2,307,354	+				+0.8
2,307,356	+				-2.3
2,307,373	-		BBR_RS20085	0.12	-1.8
2,307,408	-		BBR_RS20085	0.17	-0.5
2,307,421	+		BBR_RS20085	0.18	-2.3
2,307,421	+		BBR_RS20085	0.18	-0.7
2,307,421	+		BBR_RS20085	0.18	-2.4
2,307,427	-		BBR_RS20085	0.19	-1.6
2,307,429	-		BBR_RS20085	0.19	-1.2
2,307,438	+		BBR_RS20085	0.21	-1.5
2,307,440	+		BBR_RS20085	0.21	-2.0
2,307,464	+		BBR_RS20085	0.24	-2.0
2,307,470	+		BBR_RS20085	0.25	-2.4
2,307,492	+		BBR_RS20085	0.28	+0.8
2,307,492	+		BBR_RS20085	0.28	+0.6
2,307,492	+		BBR_RS20085	0.28	-1.2
2,307,500	-		BBR_RS20085	0.29	-0.1
2,307,500	-		BBR_RS20085	0.29	-2.1
2,307,505	-		BBR_RS20085	0.30	-1.9
2,307,514	+		BBR_RS20085	0.31	-2.9
2,307,529	-		BBR_RS20085	0.33	-2.0
2,307,551	-		BBR_RS20085	0.37	-2.4
2,307,551	-		BBR_RS20085	0.37	-0.9
2,307,551	-		BBR_RS20085	0.37	-1.4
2,307,553	+		BBR_RS20085	0.37	-0.2
2,307,556	-		BBR_RS20085	0.37	-1.2
2,307,561	-		BBR_RS20085	0.38	-1.7
2,307,561	-		BBR_RS20085	0.38	+0.3
2,307,578	-		BBR_RS20085	0.40	+0.5
2,307,598	+		BBR_RS20085	0.43	-1.7
2,307,598	+		BBR_RS20085	0.43	-1.6
2,307,598	+		BBR_RS20085	0.43	-0.9
2,307,598	+		BBR_RS20085	0.43	-1.7
2,307,600	-		BBR_RS20085	0.43	-0.9
2,307,600	-		BBR_RS20085	0.43	-0.5
2,307,606	-		BBR_RS20085	0.44	+2.1
2,307,606	-		BBR_RS20085	0.44	-2.8
2,307,628	+		BBR_RS20085	0.47	+0.0
2,307,628	+		BBR_RS20085	0.47	+1.0
2,307,628	+		BBR_RS20085	0.47	-1.8
2,307,630	+		BBR_RS20085	0.48	-1.4
2,307,630	+		BBR_RS20085	0.48	-1.6
2,307,636	-		BBR_RS20085	0.48	-1.8
2,307,636	-		BBR_RS20085	0.48	-1.8
2,307,636	-		BBR_RS20085	0.48	+0.8
2,307,636	-		BBR_RS20085	0.48	-1.3
2,307,638	-		BBR_RS20085	0.49	+0.2
2,307,638	-		BBR_RS20085	0.49	-0.8
2,307,638	-		BBR_RS20085	0.49	-0.8
2,307,641	-		BBR_RS20085	0.49	-0.9
2,307,656	+		BBR_RS20085	0.51	-2.0
2,307,656	-		BBR_RS20085	0.51	-0.1
2,307,661	+		BBR_RS20085	0.52	-1.8
2,307,664	-		BBR_RS20085	0.52	+0.3
2,307,666	-		BBR_RS20085	0.53	-1.7
2,307,666	-		BBR_RS20085	0.53	-0.4
2,307,666	-		BBR_RS20085	0.53	-1.8
2,307,667	+		BBR_RS20085	0.53	+2.3
2,307,667	+		BBR_RS20085	0.53	-1.9
2,307,668	+		BBR_RS20085	0.53	+0.3
2,307,674	+		BBR_RS20085	0.54	-2.5
2,307,686	+		BBR_RS20085	0.55	-1.9
2,307,691	+		BBR_RS20085	0.56	+0.3
2,307,694	-		BBR_RS20085	0.57	-1.6
2,307,694	-		BBR_RS20085	0.57	-0.0
2,307,694	-		BBR_RS20085	0.57	-1.0
2,307,708	+		BBR_RS20085	0.59	-0.9
2,307,717	+		BBR_RS20085	0.60	+0.1
2,307,717	+		BBR_RS20085	0.60	-1.0
2,307,717	+		BBR_RS20085	0.60	-1.7
2,307,727	+		BBR_RS20085	0.61	-1.4
2,307,727	+		BBR_RS20085	0.61	-0.7
2,307,732	-		BBR_RS20085	0.62	-2.7
2,307,735	-		BBR_RS20085	0.62	-0.4
2,307,735	-		BBR_RS20085	0.62	+0.2
2,307,735	-		BBR_RS20085	0.62	+0.5
2,307,736	-		BBR_RS20085	0.62	+1.5
2,307,762	+		BBR_RS20085	0.66	-1.6
2,307,762	+		BBR_RS20085	0.66	+1.0
2,307,771	+		BBR_RS20085	0.67	-1.4
2,307,782	+		BBR_RS20085	0.69	-0.1
2,307,801	-		BBR_RS20085	0.72	-1.7
2,307,801	-		BBR_RS20085	0.72	-0.1
2,307,802	-		BBR_RS20085	0.72	-0.1
2,307,814	-		BBR_RS20085	0.73	+0.4
2,307,820	-		BBR_RS20085	0.74	-2.8
2,307,845	-		BBR_RS20085	0.78	-2.5
2,307,862	+		BBR_RS20085	0.80	-2.0
2,307,862	-		BBR_RS20085	0.80	-0.4
2,307,864	+		BBR_RS20085	0.80	-2.1
2,307,864	+		BBR_RS20085	0.80	-1.4
2,307,864	+		BBR_RS20085	0.80	-1.2
2,307,867	+		BBR_RS20085	0.81	-1.8
2,307,871	-		BBR_RS20085	0.81	-3.5
2,307,871	-		BBR_RS20085	0.81	-2.7
2,307,871	-		BBR_RS20085	0.81	-1.1
2,307,903	-		BBR_RS20085	0.86	-1.7
2,307,944	-				-1.5
2,307,944	-				-0.2
2,307,973	+				-2.8
2,307,986	-				-1.5
2,308,001	+				+0.1
2,308,005	+				+1.6
2,308,005	-				-0.4
2,308,006	-				-0.4
2,308,008	+				+1.2
2,308,010	+				+0.9
2,308,015	+				-1.7
2,308,015	+				-0.1
2,308,015	+				+1.4
2,308,015	+				-0.6
2,308,015	+				+0.1
2,308,015	+				-2.7
2,308,015	+				-1.0
2,308,015	+				-0.8
2,308,015	+				+0.2
2,308,015	+				-0.3
2,308,015	+				+1.3
2,308,016	-				+1.4
2,308,018	+				+0.2
2,308,018	-				-2.6
2,308,018	-				-1.1
2,308,023	+				-0.5
2,308,023	-				+0.8
2,308,023	-				-1.3
2,308,023	-				-0.0
2,308,023	-				-1.3
2,308,023	-				+0.3
2,308,023	-				-0.5
2,308,036	+				+1.4
2,308,071	+				-0.8
2,308,072	+				+0.9
2,308,074	+				-0.9
2,308,080	-				+1.4
2,308,092	+				+1.1
2,308,092	+				+3.3
2,308,103	-				-1.4
2,308,129	+		BBR_RS20090	0.14	-0.9
2,308,129	+		BBR_RS20090	0.14	+0.4
2,308,129	+		BBR_RS20090	0.14	-0.6
2,308,132	+		BBR_RS20090	0.15	+0.1
2,308,137	-		BBR_RS20090	0.16	+2.0
2,308,137	-		BBR_RS20090	0.16	-1.2
2,308,144	+		BBR_RS20090	0.18	+1.9
2,308,144	+		BBR_RS20090	0.18	+2.1
2,308,145	+		BBR_RS20090	0.19	+1.9
2,308,174	+		BBR_RS20090	0.26	+0.5
2,308,179	+		BBR_RS20090	0.28	+1.8
2,308,182	-		BBR_RS20090	0.28	+2.4
2,308,185	+		BBR_RS20090	0.29	-0.4
2,308,193	+		BBR_RS20090	0.31	+1.1
2,308,193	+		BBR_RS20090	0.31	-2.1
2,308,207	+		BBR_RS20090	0.35	-2.1
2,308,207	+		BBR_RS20090	0.35	-1.6
2,308,222	+		BBR_RS20090	0.39	-0.8
2,308,228	+		BBR_RS20090	0.40	-0.0
2,308,230	-		BBR_RS20090	0.41	-1.6
2,308,230	-		BBR_RS20090	0.41	+0.8
2,308,230	-		BBR_RS20090	0.41	-0.9
2,308,257	+		BBR_RS20090	0.48	-0.2
2,308,257	+		BBR_RS20090	0.48	-1.5
2,308,265	-		BBR_RS20090	0.50	+0.2
2,308,267	+		BBR_RS20090	0.51	-1.6
2,308,267	+		BBR_RS20090	0.51	-0.5
2,308,275	-		BBR_RS20090	0.53	+2.2
2,308,275	-		BBR_RS20090	0.53	-2.5
2,308,275	-		BBR_RS20090	0.53	+0.8
2,308,280	+		BBR_RS20090	0.54	+0.8
2,308,299	+		BBR_RS20090	0.59	-0.6
2,308,307	-		BBR_RS20090	0.61	-0.6
2,308,307	-		BBR_RS20090	0.61	+1.6
2,308,314	-		BBR_RS20090	0.63	+1.4
2,308,324	+		BBR_RS20090	0.66	+1.0
2,308,324	+		BBR_RS20090	0.66	+1.0
2,308,324	+		BBR_RS20090	0.66	+0.5
2,308,324	+		BBR_RS20090	0.66	+0.8
2,308,330	-		BBR_RS20090	0.67	-1.9
2,308,330	-		BBR_RS20090	0.67	+0.1
2,308,332	-		BBR_RS20090	0.68	+3.5
2,308,332	-		BBR_RS20090	0.68	-0.3
2,308,332	-		BBR_RS20090	0.68	+0.7
2,308,332	-		BBR_RS20090	0.68	+1.7
2,308,338	-		BBR_RS20090	0.70	-2.1
2,308,384	+		BBR_RS20090	0.82	+0.7
2,308,394	+		BBR_RS20090	0.84	-0.6
2,308,414	-		BBR_RS20090	0.90	-0.8
2,308,448	-				+2.3
2,308,453	-				+0.0
2,308,462	-				+0.5
2,308,462	-				-0.5
2,308,486	+				-1.5
2,308,494	-				+1.0
2,308,494	-				+0.5
2,308,517	-				+1.4
2,308,522	+				+0.5
2,308,522	+				+1.3
2,308,530	-				+1.1
2,308,535	+				+1.4
2,308,543	-				+0.9
2,308,545	+				+0.2
2,308,545	+				+1.7
2,308,545	-				+1.1
2,308,553	-				+2.5
2,308,566	+				+1.2
2,308,566	+				+0.5
2,308,574	-				+0.9
2,308,574	-				+0.9
2,308,575	-				+0.7
2,308,609	-				-0.7
2,308,630	-		BBR_RS20095	0.11	+1.6
2,308,639	-		BBR_RS20095	0.12	+2.1
2,308,641	+		BBR_RS20095	0.12	+1.2
2,308,656	-		BBR_RS20095	0.14	+1.9
2,308,661	+		BBR_RS20095	0.15	-0.3
2,308,674	-		BBR_RS20095	0.16	+1.5
2,308,682	-		BBR_RS20095	0.17	+1.8
2,308,698	-		BBR_RS20095	0.20	+0.2
2,308,719	-		BBR_RS20095	0.22	+0.9
2,308,724	+		BBR_RS20095	0.23	+0.6
2,308,726	-		BBR_RS20095	0.23	+2.0
2,308,751	+		BBR_RS20095	0.26	+0.5
2,308,751	+		BBR_RS20095	0.26	+0.6
2,308,751	+		BBR_RS20095	0.26	+1.5
2,308,751	+		BBR_RS20095	0.26	+0.7
2,308,751	+		BBR_RS20095	0.26	+1.4
2,308,768	-		BBR_RS20095	0.29	+1.4
2,308,770	-		BBR_RS20095	0.29	+3.0
2,308,773	+		BBR_RS20095	0.29	+1.9
2,308,775	+		BBR_RS20095	0.30	+0.8
2,308,775	-		BBR_RS20095	0.30	+3.9
2,308,778	-		BBR_RS20095	0.30	+2.3
2,308,783	-		BBR_RS20095	0.31	+1.4
2,308,783	-		BBR_RS20095	0.31	+3.8
2,308,783	-		BBR_RS20095	0.31	+3.7
2,308,784	-		BBR_RS20095	0.31	+4.0
2,308,799	+		BBR_RS20095	0.33	+1.9
2,308,799	+		BBR_RS20095	0.33	+2.0
2,308,807	-		BBR_RS20095	0.34	+0.2
2,308,807	-		BBR_RS20095	0.34	+1.8
2,308,831	+		BBR_RS20095	0.37	+1.3
2,308,831	-		BBR_RS20095	0.37	+1.6
2,308,839	-		BBR_RS20095	0.38	+1.8
2,308,839	-		BBR_RS20095	0.38	+1.0
2,308,839	-		BBR_RS20095	0.38	-0.6
2,308,846	-		BBR_RS20095	0.39	+2.2
2,308,860	+		BBR_RS20095	0.41	+4.3
2,308,862	+		BBR_RS20095	0.41	+4.0
2,308,870	+		BBR_RS20095	0.42	+2.1
2,308,882	+		BBR_RS20095	0.43	+0.5
2,308,882	+		BBR_RS20095	0.43	+1.2
2,308,888	+		BBR_RS20095	0.44	-0.5
2,308,892	+		BBR_RS20095	0.45	+0.7
2,308,895	-		BBR_RS20095	0.45	+1.6
2,308,900	-		BBR_RS20095	0.46	+1.8
2,308,902	+		BBR_RS20095	0.46	+1.5
2,308,910	-		BBR_RS20095	0.47	+0.7
2,308,936	+		BBR_RS20095	0.51	+3.7
2,308,936	+		BBR_RS20095	0.51	+0.9
2,308,952	-		BBR_RS20095	0.53	+2.2
2,308,973	+		BBR_RS20095	0.55	+0.2
2,308,984	+		BBR_RS20095	0.57	+3.4
2,308,984	+		BBR_RS20095	0.57	+1.0
2,308,984	+		BBR_RS20095	0.57	+0.9
2,308,984	+		BBR_RS20095	0.57	+1.9
2,308,992	-		BBR_RS20095	0.58	+1.4
2,308,994	+		BBR_RS20095	0.58	+1.4
2,309,003	+		BBR_RS20095	0.59	+1.8