Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS16335

Experiment: diet=StandardDiet; sample=FecalPellet; mouse5; day4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS16330 and BBR_RS16335 are separated by 295 nucleotidesBBR_RS16335 and BBR_RS16340 are separated by 77 nucleotides BBR_RS16330: BBR_RS16330 - LacI family transcriptional regulator, at 1,411,466 to 1,412,572 _RS16330 BBR_RS16335: BBR_RS16335 - PKD domain-containing protein, at 1,412,868 to 1,415,651 _RS16335 BBR_RS16340: BBR_RS16340 - DUF5110 domain-containing protein, at 1,415,729 to 1,418,218 _RS16340 Position (kb) 1412 1413 1414 1415 1416Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7 8 9 10 11at 1411.868 kb on + strand, within BBR_RS16330at 1411.868 kb on + strand, within BBR_RS16330at 1411.904 kb on + strand, within BBR_RS16330at 1411.930 kb on + strand, within BBR_RS16330at 1411.953 kb on - strand, within BBR_RS16330at 1411.953 kb on - strand, within BBR_RS16330at 1411.982 kb on + strand, within BBR_RS16330at 1412.064 kb on + strand, within BBR_RS16330at 1412.082 kb on + strand, within BBR_RS16330at 1412.128 kb on + strand, within BBR_RS16330at 1412.137 kb on + strand, within BBR_RS16330at 1412.137 kb on + strand, within BBR_RS16330at 1412.145 kb on - strand, within BBR_RS16330at 1412.154 kb on + strand, within BBR_RS16330at 1412.162 kb on - strand, within BBR_RS16330at 1412.188 kb on + strand, within BBR_RS16330at 1412.196 kb on - strand, within BBR_RS16330at 1412.205 kb on + strand, within BBR_RS16330at 1412.224 kb on - strand, within BBR_RS16330at 1412.251 kb on + strand, within BBR_RS16330at 1412.283 kb on - strand, within BBR_RS16330at 1412.307 kb on - strand, within BBR_RS16330at 1412.317 kb on + strand, within BBR_RS16330at 1412.354 kb on + strand, within BBR_RS16330at 1412.382 kb on - strand, within BBR_RS16330at 1412.431 kb on + strand, within BBR_RS16330at 1412.449 kb on + strand, within BBR_RS16330at 1412.449 kb on + strand, within BBR_RS16330at 1412.456 kb on + strand, within BBR_RS16330at 1412.466 kb on - strandat 1412.503 kb on + strandat 1412.505 kb on - strandat 1412.538 kb on + strandat 1412.595 kb on + strandat 1412.667 kb on - strandat 1412.705 kb on - strandat 1412.710 kb on - strandat 1412.762 kb on + strandat 1412.847 kb on - strandat 1412.923 kb on + strandat 1412.925 kb on + strandat 1412.989 kb on - strandat 1413.051 kb on + strandat 1413.070 kb on - strandat 1413.070 kb on - strandat 1413.107 kb on - strandat 1413.179 kb on + strand, within BBR_RS16335at 1413.229 kb on + strand, within BBR_RS16335at 1413.265 kb on + strand, within BBR_RS16335at 1413.265 kb on + strand, within BBR_RS16335at 1413.270 kb on + strand, within BBR_RS16335at 1413.270 kb on + strand, within BBR_RS16335at 1413.270 kb on + strand, within BBR_RS16335at 1413.272 kb on + strand, within BBR_RS16335at 1413.278 kb on - strand, within BBR_RS16335at 1413.278 kb on - strand, within BBR_RS16335at 1413.280 kb on + strand, within BBR_RS16335at 1413.280 kb on + strand, within BBR_RS16335at 1413.286 kb on - strand, within BBR_RS16335at 1413.288 kb on - strand, within BBR_RS16335at 1413.293 kb on + strand, within BBR_RS16335at 1413.316 kb on - strand, within BBR_RS16335at 1413.358 kb on + strand, within BBR_RS16335at 1413.384 kb on + strand, within BBR_RS16335at 1413.432 kb on + strand, within BBR_RS16335at 1413.448 kb on - strand, within BBR_RS16335at 1413.530 kb on - strand, within BBR_RS16335at 1413.603 kb on + strand, within BBR_RS16335at 1413.621 kb on - strand, within BBR_RS16335at 1413.646 kb on + strand, within BBR_RS16335at 1413.659 kb on + strand, within BBR_RS16335at 1413.731 kb on - strand, within BBR_RS16335at 1413.796 kb on + strand, within BBR_RS16335at 1413.869 kb on + strand, within BBR_RS16335at 1413.900 kb on - strand, within BBR_RS16335at 1413.908 kb on - strand, within BBR_RS16335at 1413.934 kb on - strand, within BBR_RS16335at 1413.942 kb on - strand, within BBR_RS16335at 1413.956 kb on - strand, within BBR_RS16335at 1413.962 kb on - strand, within BBR_RS16335at 1414.011 kb on - strand, within BBR_RS16335at 1414.062 kb on + strand, within BBR_RS16335at 1414.070 kb on - strand, within BBR_RS16335at 1414.070 kb on - strand, within BBR_RS16335at 1414.072 kb on + strand, within BBR_RS16335at 1414.072 kb on + strand, within BBR_RS16335at 1414.080 kb on - strand, within BBR_RS16335at 1414.080 kb on - strand, within BBR_RS16335at 1414.140 kb on - strand, within BBR_RS16335at 1414.160 kb on - strand, within BBR_RS16335at 1414.182 kb on - strand, within BBR_RS16335at 1414.218 kb on - strand, within BBR_RS16335at 1414.224 kb on + strand, within BBR_RS16335at 1414.251 kb on - strand, within BBR_RS16335at 1414.317 kb on + strand, within BBR_RS16335at 1414.404 kb on + strand, within BBR_RS16335at 1414.471 kb on + strand, within BBR_RS16335at 1414.483 kb on + strand, within BBR_RS16335at 1414.502 kb on + strand, within BBR_RS16335at 1414.510 kb on - strand, within BBR_RS16335at 1414.553 kb on + strand, within BBR_RS16335at 1414.567 kb on + strand, within BBR_RS16335at 1414.567 kb on + strand, within BBR_RS16335at 1414.567 kb on + strand, within BBR_RS16335at 1414.572 kb on + strand, within BBR_RS16335at 1414.572 kb on + strand, within BBR_RS16335at 1414.586 kb on + strand, within BBR_RS16335at 1414.624 kb on + strand, within BBR_RS16335at 1414.666 kb on - strand, within BBR_RS16335at 1414.678 kb on + strand, within BBR_RS16335at 1414.850 kb on - strand, within BBR_RS16335at 1414.903 kb on - strand, within BBR_RS16335at 1414.986 kb on - strand, within BBR_RS16335at 1415.127 kb on + strand, within BBR_RS16335at 1415.127 kb on + strand, within BBR_RS16335at 1415.127 kb on + strand, within BBR_RS16335at 1415.134 kb on + strand, within BBR_RS16335at 1415.135 kb on - strand, within BBR_RS16335at 1415.139 kb on + strand, within BBR_RS16335at 1415.147 kb on - strand, within BBR_RS16335at 1415.147 kb on - strand, within BBR_RS16335at 1415.155 kb on + strand, within BBR_RS16335at 1415.165 kb on + strand, within BBR_RS16335at 1415.180 kb on + strand, within BBR_RS16335at 1415.180 kb on + strand, within BBR_RS16335at 1415.188 kb on - strand, within BBR_RS16335at 1415.188 kb on - strand, within BBR_RS16335at 1415.188 kb on - strand, within BBR_RS16335at 1415.198 kb on + strand, within BBR_RS16335at 1415.213 kb on - strand, within BBR_RS16335at 1415.231 kb on + strand, within BBR_RS16335at 1415.283 kb on + strand, within BBR_RS16335at 1415.288 kb on + strand, within BBR_RS16335at 1415.291 kb on - strand, within BBR_RS16335at 1415.291 kb on - strand, within BBR_RS16335at 1415.305 kb on - strand, within BBR_RS16335at 1415.327 kb on - strand, within BBR_RS16335at 1415.350 kb on - strand, within BBR_RS16335at 1415.365 kb on + strand, within BBR_RS16335at 1415.398 kb on + strandat 1415.398 kb on + strandat 1415.408 kb on + strandat 1415.440 kb on + strandat 1415.490 kb on - strandat 1415.492 kb on + strandat 1415.492 kb on + strandat 1415.567 kb on + strandat 1415.700 kb on - strandat 1415.705 kb on - strandat 1415.707 kb on + strandat 1415.715 kb on - strandat 1415.721 kb on - strandat 1415.730 kb on - strandat 1415.732 kb on - strandat 1415.735 kb on - strandat 1415.738 kb on + strandat 1415.746 kb on + strandat 1415.746 kb on + strandat 1415.769 kb on - strandat 1415.795 kb on + strandat 1415.803 kb on + strandat 1415.867 kb on - strandat 1415.915 kb on - strandat 1415.915 kb on - strandat 1415.935 kb on - strandat 1415.946 kb on + strandat 1415.977 kb on - strandat 1416.004 kb on + strand, within BBR_RS16340at 1416.019 kb on + strand, within BBR_RS16340at 1416.031 kb on + strand, within BBR_RS16340at 1416.031 kb on + strand, within BBR_RS16340at 1416.093 kb on - strand, within BBR_RS16340at 1416.122 kb on - strand, within BBR_RS16340at 1416.132 kb on - strand, within BBR_RS16340at 1416.132 kb on - strand, within BBR_RS16340at 1416.149 kb on - strand, within BBR_RS16340at 1416.335 kb on - strand, within BBR_RS16340at 1416.335 kb on - strand, within BBR_RS16340at 1416.352 kb on + strand, within BBR_RS16340at 1416.406 kb on - strand, within BBR_RS16340at 1416.427 kb on + strand, within BBR_RS16340at 1416.441 kb on - strand, within BBR_RS16340at 1416.631 kb on + strand, within BBR_RS16340

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; mouse5; day4
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1,411,868 + BBR_RS16330 0.36 +8.2
1,411,868 + BBR_RS16330 0.36 +8.6
1,411,904 + BBR_RS16330 0.40 +8.5
1,411,930 + BBR_RS16330 0.42 +8.3
1,411,953 - BBR_RS16330 0.44 +7.9
1,411,953 - BBR_RS16330 0.44 +7.7
1,411,982 + BBR_RS16330 0.47 +7.9
1,412,064 + BBR_RS16330 0.54 +8.2
1,412,082 + BBR_RS16330 0.56 +8.3
1,412,128 + BBR_RS16330 0.60 +8.4
1,412,137 + BBR_RS16330 0.61 +7.6
1,412,137 + BBR_RS16330 0.61 +8.8
1,412,145 - BBR_RS16330 0.61 +8.5
1,412,154 + BBR_RS16330 0.62 +8.0
1,412,162 - BBR_RS16330 0.63 +7.8
1,412,188 + BBR_RS16330 0.65 +8.4
1,412,196 - BBR_RS16330 0.66 +8.3
1,412,205 + BBR_RS16330 0.67 +8.1
1,412,224 - BBR_RS16330 0.68 +11.2
1,412,251 + BBR_RS16330 0.71 +8.8
1,412,283 - BBR_RS16330 0.74 +7.0
1,412,307 - BBR_RS16330 0.76 +7.7
1,412,317 + BBR_RS16330 0.77 +7.2
1,412,354 + BBR_RS16330 0.80 +7.1
1,412,382 - BBR_RS16330 0.83 +9.1
1,412,431 + BBR_RS16330 0.87 +8.3
1,412,449 + BBR_RS16330 0.89 +8.3
1,412,449 + BBR_RS16330 0.89 +8.4
1,412,456 + BBR_RS16330 0.89 +8.7
1,412,466 - +11.6
1,412,503 + +8.3
1,412,505 - +7.8
1,412,538 + +8.5
1,412,595 + -0.1
1,412,667 - +6.4
1,412,705 - +4.6
1,412,710 - -1.1
1,412,762 + +0.8
1,412,847 - +0.8
1,412,923 + +0.7
1,412,925 + -0.5
1,412,989 - +0.6
1,413,051 + +2.3
1,413,070 - +0.7
1,413,070 - +0.5
1,413,107 - +0.3
1,413,179 + BBR_RS16335 0.11 +1.1
1,413,229 + BBR_RS16335 0.13 +0.6
1,413,265 + BBR_RS16335 0.14 -0.7
1,413,265 + BBR_RS16335 0.14 +1.5
1,413,270 + BBR_RS16335 0.14 -2.3
1,413,270 + BBR_RS16335 0.14 +0.2
1,413,270 + BBR_RS16335 0.14 +0.4
1,413,272 + BBR_RS16335 0.15 +2.6
1,413,278 - BBR_RS16335 0.15 +1.6
1,413,278 - BBR_RS16335 0.15 +1.0
1,413,280 + BBR_RS16335 0.15 +0.3
1,413,280 + BBR_RS16335 0.15 +0.4
1,413,286 - BBR_RS16335 0.15 -1.5
1,413,288 - BBR_RS16335 0.15 -0.2
1,413,293 + BBR_RS16335 0.15 +0.4
1,413,316 - BBR_RS16335 0.16 -0.6
1,413,358 + BBR_RS16335 0.18 -1.8
1,413,384 + BBR_RS16335 0.19 -2.1
1,413,432 + BBR_RS16335 0.20 +1.9
1,413,448 - BBR_RS16335 0.21 +0.9
1,413,530 - BBR_RS16335 0.24 +1.7
1,413,603 + BBR_RS16335 0.26 -1.3
1,413,621 - BBR_RS16335 0.27 +0.4
1,413,646 + BBR_RS16335 0.28 -0.9
1,413,659 + BBR_RS16335 0.28 -1.2
1,413,731 - BBR_RS16335 0.31 -1.2
1,413,796 + BBR_RS16335 0.33 +0.3
1,413,869 + BBR_RS16335 0.36 +1.3
1,413,900 - BBR_RS16335 0.37 +1.8
1,413,908 - BBR_RS16335 0.37 +1.6
1,413,934 - BBR_RS16335 0.38 +2.7
1,413,942 - BBR_RS16335 0.39 +1.1
1,413,956 - BBR_RS16335 0.39 -0.2
1,413,962 - BBR_RS16335 0.39 +1.8
1,414,011 - BBR_RS16335 0.41 -1.2
1,414,062 + BBR_RS16335 0.43 +1.9
1,414,070 - BBR_RS16335 0.43 +1.5
1,414,070 - BBR_RS16335 0.43 -1.4
1,414,072 + BBR_RS16335 0.43 -0.6
1,414,072 + BBR_RS16335 0.43 +1.0
1,414,080 - BBR_RS16335 0.44 -2.1
1,414,080 - BBR_RS16335 0.44 +3.3
1,414,140 - BBR_RS16335 0.46 +1.2
1,414,160 - BBR_RS16335 0.46 +0.4
1,414,182 - BBR_RS16335 0.47 +0.5
1,414,218 - BBR_RS16335 0.48 +1.3
1,414,224 + BBR_RS16335 0.49 -0.5
1,414,251 - BBR_RS16335 0.50 +0.8
1,414,317 + BBR_RS16335 0.52 +0.7
1,414,404 + BBR_RS16335 0.55 -2.0
1,414,471 + BBR_RS16335 0.58 -1.0
1,414,483 + BBR_RS16335 0.58 -2.7
1,414,502 + BBR_RS16335 0.59 +1.0
1,414,510 - BBR_RS16335 0.59 +1.4
1,414,553 + BBR_RS16335 0.61 +1.4
1,414,567 + BBR_RS16335 0.61 +1.3
1,414,567 + BBR_RS16335 0.61 -0.1
1,414,567 + BBR_RS16335 0.61 +0.4
1,414,572 + BBR_RS16335 0.61 +2.6
1,414,572 + BBR_RS16335 0.61 +1.0
1,414,586 + BBR_RS16335 0.62 -0.7
1,414,624 + BBR_RS16335 0.63 +2.6
1,414,666 - BBR_RS16335 0.65 -1.6
1,414,678 + BBR_RS16335 0.65 -1.3
1,414,850 - BBR_RS16335 0.71 +0.1
1,414,903 - BBR_RS16335 0.73 +0.4
1,414,986 - BBR_RS16335 0.76 -1.4
1,415,127 + BBR_RS16335 0.81 +0.1
1,415,127 + BBR_RS16335 0.81 +2.3
1,415,127 + BBR_RS16335 0.81 -0.7
1,415,134 + BBR_RS16335 0.81 -0.3
1,415,135 - BBR_RS16335 0.81 +0.0
1,415,139 + BBR_RS16335 0.82 +2.7
1,415,147 - BBR_RS16335 0.82 +0.7
1,415,147 - BBR_RS16335 0.82 -1.0
1,415,155 + BBR_RS16335 0.82 -1.2
1,415,165 + BBR_RS16335 0.83 +2.8
1,415,180 + BBR_RS16335 0.83 -1.1
1,415,180 + BBR_RS16335 0.83 +0.4
1,415,188 - BBR_RS16335 0.83 +1.2
1,415,188 - BBR_RS16335 0.83 -0.0
1,415,188 - BBR_RS16335 0.83 +0.0
1,415,198 + BBR_RS16335 0.84 +0.4
1,415,213 - BBR_RS16335 0.84 +0.1
1,415,231 + BBR_RS16335 0.85 +0.4
1,415,283 + BBR_RS16335 0.87 +0.3
1,415,288 + BBR_RS16335 0.87 -0.8
1,415,291 - BBR_RS16335 0.87 +0.9
1,415,291 - BBR_RS16335 0.87 +0.5
1,415,305 - BBR_RS16335 0.88 -0.4
1,415,327 - BBR_RS16335 0.88 +1.5
1,415,350 - BBR_RS16335 0.89 +0.8
1,415,365 + BBR_RS16335 0.90 +0.2
1,415,398 + +0.1
1,415,398 + +0.0
1,415,408 + +1.0
1,415,440 + +0.1
1,415,490 - -0.8
1,415,492 + -2.7
1,415,492 + -1.2
1,415,567 + +3.4
1,415,700 - +2.4
1,415,705 - +0.1
1,415,707 + +3.4
1,415,715 - -1.9
1,415,721 - -0.1
1,415,730 - +0.8
1,415,732 - +0.7
1,415,735 - +1.2
1,415,738 + +1.3
1,415,746 + -1.6
1,415,746 + +0.5
1,415,769 - +0.4
1,415,795 + +0.2
1,415,803 + -1.0
1,415,867 - -1.2
1,415,915 - +0.8
1,415,915 - +0.8
1,415,935 - -1.1
1,415,946 + +0.7
1,415,977 - -0.2
1,416,004 + BBR_RS16340 0.11 -0.4
1,416,019 + BBR_RS16340 0.12 -2.6
1,416,031 + BBR_RS16340 0.12 +1.0
1,416,031 + BBR_RS16340 0.12 +2.9
1,416,093 - BBR_RS16340 0.15 -1.4
1,416,122 - BBR_RS16340 0.16 -0.4
1,416,132 - BBR_RS16340 0.16 -1.4
1,416,132 - BBR_RS16340 0.16 +0.9
1,416,149 - BBR_RS16340 0.17 -2.3
1,416,335 - BBR_RS16340 0.24 +0.5
1,416,335 - BBR_RS16340 0.24 -0.7
1,416,352 + BBR_RS16340 0.25 -0.8
1,416,406 - BBR_RS16340 0.27 +1.0
1,416,427 + BBR_RS16340 0.28 +0.3
1,416,441 - BBR_RS16340 0.29 +0.1
1,416,631 + BBR_RS16340 0.36 +0.7

Or see this region's nucleotide sequence