Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS13575

Experiment: diet=StandardDiet; sample=FecalPellet; mouse5; day4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS13565 and BBR_RS20785 are separated by 299 nucleotidesBBR_RS20785 and BBR_RS13575 are separated by 39 nucleotidesBBR_RS13575 and BBR_RS13580 are separated by 9 nucleotidesBBR_RS13580 and BBR_RS13585 are separated by 167 nucleotides BBR_RS13565: BBR_RS13565 - DNA-(apurinic or apyrimidinic site) lyase endonuclease III base excision repair, at 816,349 to 817,041 _RS13565 BBR_RS20785: BBR_RS20785 - PadR family transcriptional regulator, at 817,341 to 817,487 _RS20785 BBR_RS13575: BBR_RS13575 - sugar O-acetyltransferase, at 817,527 to 818,201 _RS13575 BBR_RS13580: BBR_RS13580 - nodulation protein L, at 818,211 to 818,474 _RS13580 BBR_RS13585: BBR_RS13585 - transporter, at 818,642 to 819,712 _RS13585 Position (kb) 817 818 819Strain fitness (log2 ratio) -2 -1 0 1 2 3at 816.534 kb on - strand, within BBR_RS13565at 816.549 kb on + strand, within BBR_RS13565at 816.567 kb on + strand, within BBR_RS13565at 816.569 kb on - strand, within BBR_RS13565at 816.607 kb on - strand, within BBR_RS13565at 816.632 kb on + strand, within BBR_RS13565at 816.640 kb on - strand, within BBR_RS13565at 816.663 kb on + strand, within BBR_RS13565at 816.666 kb on - strand, within BBR_RS13565at 816.685 kb on - strand, within BBR_RS13565at 816.687 kb on + strand, within BBR_RS13565at 816.704 kb on - strand, within BBR_RS13565at 816.787 kb on + strand, within BBR_RS13565at 816.855 kb on - strand, within BBR_RS13565at 816.894 kb on + strand, within BBR_RS13565at 817.078 kb on + strandat 817.226 kb on + strandat 817.226 kb on + strandat 817.226 kb on + strandat 817.226 kb on + strandat 817.313 kb on - strandat 817.371 kb on - strand, within BBR_RS20785at 817.371 kb on - strand, within BBR_RS20785at 817.603 kb on + strand, within BBR_RS13575at 817.700 kb on - strand, within BBR_RS13575at 817.755 kb on + strand, within BBR_RS13575at 817.755 kb on + strand, within BBR_RS13575at 817.763 kb on - strand, within BBR_RS13575at 817.793 kb on + strand, within BBR_RS13575at 817.810 kb on - strand, within BBR_RS13575at 817.852 kb on - strand, within BBR_RS13575at 817.852 kb on - strand, within BBR_RS13575at 817.927 kb on + strand, within BBR_RS13575at 817.927 kb on + strand, within BBR_RS13575at 817.927 kb on + strand, within BBR_RS13575at 817.927 kb on + strand, within BBR_RS13575at 817.927 kb on + strand, within BBR_RS13575at 817.927 kb on + strand, within BBR_RS13575at 817.927 kb on + strand, within BBR_RS13575at 817.968 kb on + strand, within BBR_RS13575at 817.998 kb on - strand, within BBR_RS13575at 818.028 kb on + strand, within BBR_RS13575at 818.043 kb on + strand, within BBR_RS13575at 818.116 kb on - strand, within BBR_RS13575at 818.116 kb on - strand, within BBR_RS13575at 818.163 kb on + strandat 818.191 kb on + strandat 818.191 kb on + strandat 818.201 kb on - strandat 818.299 kb on - strand, within BBR_RS13580at 818.317 kb on + strand, within BBR_RS13580at 818.317 kb on + strand, within BBR_RS13580at 818.319 kb on + strand, within BBR_RS13580at 818.336 kb on - strand, within BBR_RS13580at 818.401 kb on - strand, within BBR_RS13580at 818.407 kb on + strand, within BBR_RS13580at 818.424 kb on + strand, within BBR_RS13580at 818.429 kb on + strand, within BBR_RS13580at 818.443 kb on + strand, within BBR_RS13580at 818.447 kb on + strand, within BBR_RS13580at 818.451 kb on - strandat 818.451 kb on - strandat 818.475 kb on - strandat 818.475 kb on - strandat 818.537 kb on - strandat 818.537 kb on - strandat 818.573 kb on + strandat 818.576 kb on - strandat 818.581 kb on - strandat 818.581 kb on - strandat 818.648 kb on - strandat 818.710 kb on - strandat 818.712 kb on - strandat 818.757 kb on + strand, within BBR_RS13585at 818.762 kb on + strand, within BBR_RS13585at 818.770 kb on + strand, within BBR_RS13585at 818.770 kb on - strand, within BBR_RS13585at 818.823 kb on + strand, within BBR_RS13585at 818.889 kb on - strand, within BBR_RS13585at 818.920 kb on + strand, within BBR_RS13585at 818.920 kb on + strand, within BBR_RS13585at 818.920 kb on + strand, within BBR_RS13585at 819.043 kb on - strand, within BBR_RS13585at 819.064 kb on + strand, within BBR_RS13585at 819.064 kb on + strand, within BBR_RS13585at 819.078 kb on + strand, within BBR_RS13585at 819.078 kb on + strand, within BBR_RS13585at 819.078 kb on + strand, within BBR_RS13585at 819.078 kb on + strand, within BBR_RS13585at 819.078 kb on + strand, within BBR_RS13585at 819.078 kb on + strand, within BBR_RS13585at 819.078 kb on + strand, within BBR_RS13585at 819.078 kb on + strand, within BBR_RS13585at 819.078 kb on + strand, within BBR_RS13585at 819.086 kb on - strand, within BBR_RS13585at 819.086 kb on - strand, within BBR_RS13585at 819.086 kb on - strand, within BBR_RS13585

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; mouse5; day4
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816,534 - BBR_RS13565 0.27 -1.9
816,549 + BBR_RS13565 0.29 +2.8
816,567 + BBR_RS13565 0.31 +0.7
816,569 - BBR_RS13565 0.32 +0.8
816,607 - BBR_RS13565 0.37 -0.6
816,632 + BBR_RS13565 0.41 -0.9
816,640 - BBR_RS13565 0.42 -1.2
816,663 + BBR_RS13565 0.45 +1.3
816,666 - BBR_RS13565 0.46 +1.0
816,685 - BBR_RS13565 0.48 +1.5
816,687 + BBR_RS13565 0.49 +0.8
816,704 - BBR_RS13565 0.51 +2.5
816,787 + BBR_RS13565 0.63 +1.6
816,855 - BBR_RS13565 0.73 +0.6
816,894 + BBR_RS13565 0.79 -0.1
817,078 + +1.2
817,226 + +1.2
817,226 + -0.4
817,226 + +0.6
817,226 + +0.8
817,313 - +0.0
817,371 - BBR_RS20785 0.20 -0.1
817,371 - BBR_RS20785 0.20 +0.5
817,603 + BBR_RS13575 0.11 +2.1
817,700 - BBR_RS13575 0.26 -0.9
817,755 + BBR_RS13575 0.34 +1.4
817,755 + BBR_RS13575 0.34 -1.5
817,763 - BBR_RS13575 0.35 +3.0
817,793 + BBR_RS13575 0.39 +0.6
817,810 - BBR_RS13575 0.42 -0.7
817,852 - BBR_RS13575 0.48 -2.3
817,852 - BBR_RS13575 0.48 -0.3
817,927 + BBR_RS13575 0.59 +1.6
817,927 + BBR_RS13575 0.59 -0.2
817,927 + BBR_RS13575 0.59 -1.9
817,927 + BBR_RS13575 0.59 -1.4
817,927 + BBR_RS13575 0.59 -0.6
817,927 + BBR_RS13575 0.59 -0.1
817,927 + BBR_RS13575 0.59 -0.9
817,968 + BBR_RS13575 0.65 -0.9
817,998 - BBR_RS13575 0.70 +0.5
818,028 + BBR_RS13575 0.74 -1.4
818,043 + BBR_RS13575 0.76 -0.6
818,116 - BBR_RS13575 0.87 -1.2
818,116 - BBR_RS13575 0.87 -1.2
818,163 + -1.1
818,191 + +0.8
818,191 + -0.2
818,201 - +0.8
818,299 - BBR_RS13580 0.33 +1.9
818,317 + BBR_RS13580 0.40 +2.6
818,317 + BBR_RS13580 0.40 +1.9
818,319 + BBR_RS13580 0.41 -2.2
818,336 - BBR_RS13580 0.47 -1.0
818,401 - BBR_RS13580 0.72 -0.2
818,407 + BBR_RS13580 0.74 -2.1
818,424 + BBR_RS13580 0.81 +0.3
818,429 + BBR_RS13580 0.83 -1.2
818,443 + BBR_RS13580 0.88 -0.3
818,447 + BBR_RS13580 0.89 +0.4
818,451 - +1.8
818,451 - +0.1
818,475 - +0.8
818,475 - -1.3
818,537 - +0.5
818,537 - +1.0
818,573 + -0.4
818,576 - +1.0
818,581 - -1.7
818,581 - -0.8
818,648 - +0.4
818,710 - +3.3
818,712 - -1.2
818,757 + BBR_RS13585 0.11 -2.4
818,762 + BBR_RS13585 0.11 +0.1
818,770 + BBR_RS13585 0.12 -0.4
818,770 - BBR_RS13585 0.12 -0.8
818,823 + BBR_RS13585 0.17 +0.7
818,889 - BBR_RS13585 0.23 -0.3
818,920 + BBR_RS13585 0.26 +0.9
818,920 + BBR_RS13585 0.26 -1.5
818,920 + BBR_RS13585 0.26 -1.5
819,043 - BBR_RS13585 0.37 -1.3
819,064 + BBR_RS13585 0.39 +0.1
819,064 + BBR_RS13585 0.39 +3.0
819,078 + BBR_RS13585 0.41 -2.0
819,078 + BBR_RS13585 0.41 -1.0
819,078 + BBR_RS13585 0.41 -0.7
819,078 + BBR_RS13585 0.41 +2.7
819,078 + BBR_RS13585 0.41 -1.8
819,078 + BBR_RS13585 0.41 +2.1
819,078 + BBR_RS13585 0.41 +0.1
819,078 + BBR_RS13585 0.41 -1.3
819,078 + BBR_RS13585 0.41 +1.6
819,086 - BBR_RS13585 0.41 +3.2
819,086 - BBR_RS13585 0.41 +1.5
819,086 - BBR_RS13585 0.41 -0.4

Or see this region's nucleotide sequence