Experiment: Formate/Acetate-Sulfite (60/30-40 mM) + 0.1% Yeast Extract
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0578 and DVU0579 overlap by 4 nucleotides DVU0579 and moaA overlap by 4 nucleotides moaA and DVU0581 are separated by 236 nucleotides DVU0581 and DVU0582 are separated by 35 nucleotides
DVU0578: DVU0578 - formate dehydrogenase accessory protein FdhD, putative (TIGR), at 642,474 to 643,262
DVU0578
DVU0579: DVU0579 - molybdopterin-guanine dinucleotide biosynthesis protein A, putative (TIGR), at 643,259 to 643,927
DVU0579
DVU0580: moaA - molybdenum cofactor biosynthesis protein A (TIGR), at 643,924 to 644,949
moaA
DVU0581: DVU0581 - response regulator/anti-anti-sigma factor (TIGR), at 645,186 to 645,887
DVU0581
DVU0582: DVU0582 - sensory box histidine kinase (TIGR), at 645,923 to 647,941
DVU0582
Position (kb) 643
644
645 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 642.931 kb on + strand, within DVU0578 at 642.931 kb on + strand, within DVU0578 at 642.931 kb on + strand, within DVU0578 at 642.931 kb on + strand, within DVU0578 at 642.963 kb on + strand, within DVU0578 at 642.963 kb on + strand, within DVU0578 at 643.076 kb on + strand, within DVU0578 at 643.180 kb on + strand, within DVU0578 at 643.188 kb on + strand at 643.198 kb on - strand at 643.323 kb on + strand at 643.362 kb on - strand, within DVU0579 at 643.419 kb on + strand, within DVU0579 at 643.427 kb on - strand, within DVU0579 at 643.435 kb on - strand, within DVU0579 at 643.488 kb on + strand, within DVU0579 at 643.506 kb on - strand, within DVU0579 at 643.509 kb on + strand, within DVU0579 at 643.517 kb on - strand, within DVU0579 at 643.543 kb on - strand, within DVU0579 at 643.569 kb on - strand, within DVU0579 at 643.598 kb on - strand, within DVU0579 at 643.609 kb on - strand, within DVU0579 at 643.685 kb on + strand, within DVU0579 at 643.816 kb on + strand, within DVU0579 at 643.825 kb on - strand, within DVU0579 at 643.849 kb on + strand, within DVU0579 at 643.856 kb on + strand, within DVU0579 at 643.882 kb on - strand at 643.973 kb on + strand at 643.981 kb on - strand at 644.017 kb on + strand at 644.187 kb on - strand, within moaA at 644.190 kb on + strand, within moaA at 644.309 kb on + strand, within moaA at 644.426 kb on - strand, within moaA at 644.449 kb on - strand, within moaA at 644.669 kb on + strand, within moaA at 644.808 kb on - strand, within moaA at 644.810 kb on + strand, within moaA at 644.810 kb on + strand, within moaA at 644.818 kb on - strand, within moaA at 644.850 kb on - strand at 644.925 kb on + strand at 644.925 kb on + strand at 644.999 kb on - strand at 645.009 kb on - strand at 645.072 kb on + strand at 645.077 kb on + strand at 645.093 kb on - strand at 645.110 kb on + strand at 645.191 kb on + strand at 645.191 kb on - strand at 645.196 kb on + strand at 645.261 kb on - strand, within DVU0581 at 645.279 kb on + strand, within DVU0581 at 645.287 kb on - strand, within DVU0581 at 645.307 kb on + strand, within DVU0581 at 645.310 kb on + strand, within DVU0581 at 645.312 kb on + strand, within DVU0581 at 645.320 kb on - strand, within DVU0581 at 645.385 kb on - strand, within DVU0581 at 645.433 kb on + strand, within DVU0581 at 645.433 kb on + strand, within DVU0581 at 645.478 kb on - strand, within DVU0581 at 645.544 kb on + strand, within DVU0581 at 645.612 kb on + strand, within DVU0581 at 645.633 kb on + strand, within DVU0581 at 645.633 kb on + strand, within DVU0581 at 645.642 kb on + strand, within DVU0581 at 645.650 kb on - strand, within DVU0581 at 645.686 kb on + strand, within DVU0581 at 645.686 kb on + strand, within DVU0581 at 645.694 kb on - strand, within DVU0581 at 645.811 kb on + strand, within DVU0581 at 645.843 kb on + strand at 645.903 kb on + strand at 645.911 kb on - strand at 645.933 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (60/30-40 mM) + 0.1% Yeast Extract remove 642,931 + DVU0578 0.58 -1.1 642,931 + DVU0578 0.58 +0.0 642,931 + DVU0578 0.58 -1.0 642,931 + DVU0578 0.58 -1.0 642,963 + DVU0578 0.62 -0.7 642,963 + DVU0578 0.62 -1.2 643,076 + DVU0578 0.76 -1.4 643,180 + DVU0578 0.89 -1.0 643,188 + -1.5 643,198 - -1.2 643,323 + -1.7 643,362 - DVU0579 0.15 +0.0 643,419 + DVU0579 0.24 -2.2 643,427 - DVU0579 0.25 -2.1 643,435 - DVU0579 0.26 -1.3 643,488 + DVU0579 0.34 -1.3 643,506 - DVU0579 0.37 -2.0 643,509 + DVU0579 0.37 -2.2 643,517 - DVU0579 0.39 -1.2 643,543 - DVU0579 0.42 -2.4 643,569 - DVU0579 0.46 -1.1 643,598 - DVU0579 0.51 -0.1 643,609 - DVU0579 0.52 -1.0 643,685 + DVU0579 0.64 -1.8 643,816 + DVU0579 0.83 -1.3 643,825 - DVU0579 0.85 +0.6 643,849 + DVU0579 0.88 -1.0 643,856 + DVU0579 0.89 -1.3 643,882 - -0.4 643,973 + -1.6 643,981 - -2.9 644,017 + -2.7 644,187 - moaA DVU0580 0.26 -0.7 644,190 + moaA DVU0580 0.26 -2.3 644,309 + moaA DVU0580 0.38 -1.1 644,426 - moaA DVU0580 0.49 -1.1 644,449 - moaA DVU0580 0.51 -1.1 644,669 + moaA DVU0580 0.73 -1.6 644,808 - moaA DVU0580 0.86 -1.8 644,810 + moaA DVU0580 0.86 -2.5 644,810 + moaA DVU0580 0.86 -1.8 644,818 - moaA DVU0580 0.87 -1.0 644,850 - -1.5 644,925 + -1.7 644,925 + -1.9 644,999 - -1.5 645,009 - +0.4 645,072 + -0.4 645,077 + +0.2 645,093 - -0.3 645,110 + -1.3 645,191 + -0.5 645,191 - +0.8 645,196 + +1.6 645,261 - DVU0581 0.11 -0.9 645,279 + DVU0581 0.13 -1.2 645,287 - DVU0581 0.14 -0.1 645,307 + DVU0581 0.17 -0.3 645,310 + DVU0581 0.18 -0.2 645,312 + DVU0581 0.18 -0.3 645,320 - DVU0581 0.19 +0.0 645,385 - DVU0581 0.28 -0.2 645,433 + DVU0581 0.35 +0.6 645,433 + DVU0581 0.35 -0.5 645,478 - DVU0581 0.42 +1.5 645,544 + DVU0581 0.51 +0.6 645,612 + DVU0581 0.61 -0.2 645,633 + DVU0581 0.64 +0.0 645,633 + DVU0581 0.64 +0.8 645,642 + DVU0581 0.65 -0.4 645,650 - DVU0581 0.66 -2.3 645,686 + DVU0581 0.71 -0.1 645,686 + DVU0581 0.71 -0.2 645,694 - DVU0581 0.72 +0.7 645,811 + DVU0581 0.89 +0.4 645,843 + +0.2 645,903 + -0.4 645,911 - +1.4 645,933 + -0.2
Or see this region's nucleotide sequence