Experiment: Formate/Acetate-Sulfite (60/30-40 mM) + 0.1% Yeast Extract
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0354 and DVU0355 are separated by 123 nucleotides DVU0355 and tag are separated by 120 nucleotides tag and DVU0357 are separated by 11 nucleotides
DVU0354: DVU0354 - conserved domain protein (TIGR), at 402,499 to 403,404
DVU0354
DVU0355: DVU0355 - sensory box/GGDEF domain protein (TIGR), at 403,528 to 405,351
DVU0355
DVU0356: tag - DNA-3-methyladenine glycosylase I (TIGR), at 405,472 to 406,047
tag
DVU0357: DVU0357 - conserved hypothetical protein (TIGR), at 406,059 to 406,976
DVU0357
Position (kb) 403
404
405
406 Strain fitness (log2 ratio) -2
-1
0
1
2 at 402.557 kb on - strand at 402.574 kb on + strand at 402.621 kb on - strand, within DVU0354 at 402.628 kb on + strand, within DVU0354 at 402.633 kb on + strand, within DVU0354 at 402.638 kb on + strand, within DVU0354 at 402.643 kb on + strand, within DVU0354 at 402.645 kb on + strand, within DVU0354 at 402.646 kb on - strand, within DVU0354 at 402.646 kb on - strand, within DVU0354 at 402.651 kb on - strand, within DVU0354 at 402.677 kb on + strand, within DVU0354 at 402.683 kb on + strand, within DVU0354 at 402.685 kb on + strand, within DVU0354 at 402.685 kb on - strand, within DVU0354 at 402.817 kb on + strand, within DVU0354 at 402.832 kb on + strand, within DVU0354 at 402.837 kb on - strand, within DVU0354 at 402.857 kb on + strand, within DVU0354 at 402.882 kb on + strand, within DVU0354 at 402.891 kb on - strand, within DVU0354 at 402.903 kb on + strand, within DVU0354 at 402.903 kb on + strand, within DVU0354 at 402.911 kb on - strand, within DVU0354 at 402.911 kb on - strand, within DVU0354 at 402.911 kb on - strand, within DVU0354 at 402.911 kb on - strand, within DVU0354 at 402.911 kb on - strand, within DVU0354 at 402.911 kb on - strand, within DVU0354 at 402.939 kb on - strand, within DVU0354 at 402.970 kb on + strand, within DVU0354 at 403.003 kb on + strand, within DVU0354 at 403.037 kb on + strand, within DVU0354 at 403.065 kb on + strand, within DVU0354 at 403.115 kb on - strand, within DVU0354 at 403.204 kb on + strand, within DVU0354 at 403.227 kb on - strand, within DVU0354 at 403.227 kb on - strand, within DVU0354 at 403.308 kb on + strand, within DVU0354 at 403.349 kb on - strand at 403.438 kb on + strand at 403.451 kb on - strand at 403.496 kb on + strand at 403.508 kb on + strand at 403.508 kb on + strand at 403.508 kb on + strand at 403.508 kb on + strand at 403.526 kb on - strand at 403.546 kb on - strand at 403.556 kb on - strand at 403.556 kb on - strand at 403.556 kb on - strand at 403.586 kb on + strand at 403.591 kb on + strand at 403.599 kb on - strand at 403.653 kb on + strand at 403.679 kb on + strand at 403.699 kb on + strand at 403.699 kb on + strand at 403.769 kb on + strand, within DVU0355 at 403.832 kb on - strand, within DVU0355 at 403.886 kb on - strand, within DVU0355 at 403.904 kb on + strand, within DVU0355 at 403.904 kb on + strand, within DVU0355 at 403.904 kb on + strand, within DVU0355 at 403.904 kb on + strand, within DVU0355 at 403.912 kb on - strand, within DVU0355 at 403.912 kb on - strand, within DVU0355 at 403.930 kb on + strand, within DVU0355 at 403.941 kb on + strand, within DVU0355 at 403.943 kb on - strand, within DVU0355 at 404.025 kb on + strand, within DVU0355 at 404.087 kb on + strand, within DVU0355 at 404.127 kb on + strand, within DVU0355 at 404.141 kb on + strand, within DVU0355 at 404.149 kb on - strand, within DVU0355 at 404.233 kb on + strand, within DVU0355 at 404.233 kb on + strand, within DVU0355 at 404.233 kb on + strand, within DVU0355 at 404.233 kb on + strand, within DVU0355 at 404.288 kb on + strand, within DVU0355 at 404.293 kb on + strand, within DVU0355 at 404.329 kb on + strand, within DVU0355 at 404.418 kb on + strand, within DVU0355 at 404.418 kb on - strand, within DVU0355 at 404.422 kb on + strand, within DVU0355 at 404.422 kb on + strand, within DVU0355 at 404.429 kb on + strand, within DVU0355 at 404.467 kb on + strand, within DVU0355 at 404.497 kb on - strand, within DVU0355 at 404.586 kb on - strand, within DVU0355 at 404.635 kb on - strand, within DVU0355 at 404.706 kb on - strand, within DVU0355 at 404.768 kb on - strand, within DVU0355 at 404.768 kb on - strand, within DVU0355 at 404.789 kb on + strand, within DVU0355 at 404.797 kb on - strand, within DVU0355 at 404.801 kb on + strand, within DVU0355 at 404.818 kb on - strand, within DVU0355 at 404.886 kb on + strand, within DVU0355 at 404.929 kb on + strand, within DVU0355 at 404.941 kb on + strand, within DVU0355 at 404.981 kb on + strand, within DVU0355 at 405.087 kb on - strand, within DVU0355 at 405.087 kb on - strand, within DVU0355 at 405.134 kb on + strand, within DVU0355 at 405.161 kb on + strand, within DVU0355 at 405.174 kb on - strand at 405.174 kb on - strand at 405.191 kb on + strand at 405.203 kb on + strand at 405.226 kb on + strand at 405.297 kb on + strand at 405.307 kb on - strand at 405.342 kb on - strand at 405.379 kb on + strand at 405.399 kb on + strand at 405.468 kb on + strand at 405.469 kb on + strand at 405.476 kb on - strand at 405.491 kb on - strand at 405.514 kb on - strand at 405.530 kb on + strand, within tag at 405.640 kb on + strand, within tag at 405.676 kb on + strand, within tag at 405.676 kb on + strand, within tag at 405.681 kb on + strand, within tag at 405.711 kb on + strand, within tag at 405.719 kb on - strand, within tag at 405.757 kb on - strand, within tag at 405.765 kb on + strand, within tag at 405.765 kb on + strand, within tag at 405.817 kb on + strand, within tag at 405.902 kb on + strand, within tag at 405.935 kb on - strand, within tag at 405.944 kb on - strand, within tag at 405.991 kb on + strand at 405.998 kb on + strand at 406.003 kb on + strand at 406.179 kb on - strand, within DVU0357 at 406.181 kb on + strand, within DVU0357 at 406.188 kb on - strand, within DVU0357 at 406.189 kb on - strand, within DVU0357 at 406.189 kb on - strand, within DVU0357 at 406.212 kb on + strand, within DVU0357 at 406.326 kb on - strand, within DVU0357 at 406.332 kb on + strand, within DVU0357 at 406.350 kb on - strand, within DVU0357
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (60/30-40 mM) + 0.1% Yeast Extract remove 402,557 - -0.2 402,574 + +0.6 402,621 - DVU0354 0.13 -0.1 402,628 + DVU0354 0.14 -0.5 402,633 + DVU0354 0.15 +0.2 402,638 + DVU0354 0.15 +0.1 402,643 + DVU0354 0.16 +0.1 402,645 + DVU0354 0.16 -0.3 402,646 - DVU0354 0.16 -0.2 402,646 - DVU0354 0.16 -0.0 402,651 - DVU0354 0.17 -0.2 402,677 + DVU0354 0.20 +0.5 402,683 + DVU0354 0.20 -1.2 402,685 + DVU0354 0.21 -0.3 402,685 - DVU0354 0.21 -0.4 402,817 + DVU0354 0.35 -0.1 402,832 + DVU0354 0.37 -0.1 402,837 - DVU0354 0.37 -1.7 402,857 + DVU0354 0.40 +0.6 402,882 + DVU0354 0.42 -0.3 402,891 - DVU0354 0.43 -1.4 402,903 + DVU0354 0.45 -0.7 402,903 + DVU0354 0.45 +0.1 402,911 - DVU0354 0.45 -1.0 402,911 - DVU0354 0.45 -0.8 402,911 - DVU0354 0.45 +0.1 402,911 - DVU0354 0.45 -1.3 402,911 - DVU0354 0.45 +1.7 402,911 - DVU0354 0.45 -0.2 402,939 - DVU0354 0.49 -0.7 402,970 + DVU0354 0.52 -1.0 403,003 + DVU0354 0.56 +0.4 403,037 + DVU0354 0.59 -0.9 403,065 + DVU0354 0.62 +0.7 403,115 - DVU0354 0.68 -0.3 403,204 + DVU0354 0.78 -0.5 403,227 - DVU0354 0.80 -0.3 403,227 - DVU0354 0.80 -0.5 403,308 + DVU0354 0.89 +0.1 403,349 - +2.3 403,438 + -0.9 403,451 - -1.3 403,496 + -1.3 403,508 + +0.1 403,508 + -0.4 403,508 + -0.6 403,508 + -0.2 403,526 - -0.1 403,546 - -0.4 403,556 - -0.2 403,556 - -0.2 403,556 - -0.0 403,586 + -0.1 403,591 + -0.1 403,599 - -0.6 403,653 + +2.3 403,679 + -0.4 403,699 + -0.1 403,699 + +0.4 403,769 + DVU0355 0.13 -0.7 403,832 - DVU0355 0.17 -1.0 403,886 - DVU0355 0.20 -0.2 403,904 + DVU0355 0.21 -0.6 403,904 + DVU0355 0.21 +0.3 403,904 + DVU0355 0.21 -0.1 403,904 + DVU0355 0.21 +1.2 403,912 - DVU0355 0.21 +0.4 403,912 - DVU0355 0.21 -0.0 403,930 + DVU0355 0.22 -1.1 403,941 + DVU0355 0.23 +0.1 403,943 - DVU0355 0.23 +0.4 404,025 + DVU0355 0.27 +1.5 404,087 + DVU0355 0.31 -0.2 404,127 + DVU0355 0.33 -0.7 404,141 + DVU0355 0.34 -1.0 404,149 - DVU0355 0.34 -0.0 404,233 + DVU0355 0.39 -0.4 404,233 + DVU0355 0.39 +0.3 404,233 + DVU0355 0.39 +0.7 404,233 + DVU0355 0.39 -1.0 404,288 + DVU0355 0.42 -0.3 404,293 + DVU0355 0.42 +0.7 404,329 + DVU0355 0.44 +0.2 404,418 + DVU0355 0.49 -0.2 404,418 - DVU0355 0.49 +0.2 404,422 + DVU0355 0.49 +0.2 404,422 + DVU0355 0.49 -0.8 404,429 + DVU0355 0.49 +0.3 404,467 + DVU0355 0.51 +0.4 404,497 - DVU0355 0.53 +0.4 404,586 - DVU0355 0.58 +2.3 404,635 - DVU0355 0.61 -0.0 404,706 - DVU0355 0.65 -0.4 404,768 - DVU0355 0.68 +0.2 404,768 - DVU0355 0.68 -0.1 404,789 + DVU0355 0.69 +0.2 404,797 - DVU0355 0.70 +1.2 404,801 + DVU0355 0.70 +0.1 404,818 - DVU0355 0.71 +0.3 404,886 + DVU0355 0.74 +0.5 404,929 + DVU0355 0.77 -0.3 404,941 + DVU0355 0.77 +1.7 404,981 + DVU0355 0.80 +1.1 405,087 - DVU0355 0.85 +1.7 405,087 - DVU0355 0.85 -0.1 405,134 + DVU0355 0.88 -0.6 405,161 + DVU0355 0.90 +0.3 405,174 - +0.8 405,174 - -0.3 405,191 + -1.0 405,203 + -0.1 405,226 + +0.2 405,297 + +2.3 405,307 - -0.3 405,342 - +1.3 405,379 + +1.6 405,399 + +1.3 405,468 + -1.5 405,469 + +0.2 405,476 - -1.8 405,491 - -1.8 405,514 - -0.5 405,530 + tag DVU0356 0.10 +1.0 405,640 + tag DVU0356 0.29 -0.5 405,676 + tag DVU0356 0.35 -0.1 405,676 + tag DVU0356 0.35 +0.5 405,681 + tag DVU0356 0.36 -0.7 405,711 + tag DVU0356 0.41 +0.6 405,719 - tag DVU0356 0.43 -0.5 405,757 - tag DVU0356 0.49 -0.2 405,765 + tag DVU0356 0.51 -0.3 405,765 + tag DVU0356 0.51 -1.3 405,817 + tag DVU0356 0.60 -0.7 405,902 + tag DVU0356 0.75 -0.0 405,935 - tag DVU0356 0.80 -0.5 405,944 - tag DVU0356 0.82 -0.5 405,991 + -0.3 405,998 + -0.1 406,003 + -0.2 406,179 - DVU0357 0.13 +0.1 406,181 + DVU0357 0.13 -0.2 406,188 - DVU0357 0.14 +0.9 406,189 - DVU0357 0.14 -0.1 406,189 - DVU0357 0.14 +0.4 406,212 + DVU0357 0.17 -0.1 406,326 - DVU0357 0.29 -0.4 406,332 + DVU0357 0.30 -0.4 406,350 - DVU0357 0.32 -1.7
Or see this region's nucleotide sequence