Experiment: Formate/Acetate-Sulfite (60/30-40 mM) + 0.1% Yeast Extract
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nirJ-1 and DVU0858 are separated by 315 nucleotides DVU0858 and DORF7824 are separated by 84 nucleotides DORF7824 and DVU0859 are separated by 14 nucleotides
DVU0857: nirJ-1 - radical SAM domain protein (TIGR), at 946,761 to 947,942
nirJ-1
DVU0858: DVU0858 - lipoprotein, putative (TIGR), at 948,258 to 948,941
DVU0858
DORF7824: DORF7824 - SEED: FIG00603141: hypothetical protein, at 949,026 to 949,361
DORF7824
DVU0859: DVU0859 - hypothetical protein (TIGR), at 949,376 to 950,656
DVU0859
Position (kb) 948
949 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 948.113 kb on - strand at 948.189 kb on + strand at 948.201 kb on + strand at 948.223 kb on + strand at 948.312 kb on + strand at 948.322 kb on + strand at 948.345 kb on + strand, within DVU0858 at 948.394 kb on - strand, within DVU0858 at 948.403 kb on + strand, within DVU0858 at 948.571 kb on + strand, within DVU0858 at 948.579 kb on - strand, within DVU0858 at 948.603 kb on - strand, within DVU0858 at 948.664 kb on - strand, within DVU0858 at 948.664 kb on - strand, within DVU0858 at 948.794 kb on - strand, within DVU0858 at 948.795 kb on - strand, within DVU0858 at 948.854 kb on - strand, within DVU0858 at 948.894 kb on + strand at 948.894 kb on + strand at 948.902 kb on - strand at 948.925 kb on + strand at 948.960 kb on - strand at 948.974 kb on + strand at 949.042 kb on - strand at 949.107 kb on - strand, within DORF7824 at 949.109 kb on + strand, within DORF7824 at 949.112 kb on - strand, within DORF7824 at 949.247 kb on - strand, within DORF7824 at 949.264 kb on + strand, within DORF7824 at 949.264 kb on + strand, within DORF7824 at 949.310 kb on + strand, within DORF7824 at 949.351 kb on + strand at 949.419 kb on - strand at 949.507 kb on - strand, within DVU0859 at 949.562 kb on + strand, within DVU0859 at 949.568 kb on - strand, within DVU0859 at 949.783 kb on + strand, within DVU0859 at 949.800 kb on - strand, within DVU0859 at 949.806 kb on + strand, within DVU0859 at 949.857 kb on - strand, within DVU0859 at 949.937 kb on + strand, within DVU0859
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (60/30-40 mM) + 0.1% Yeast Extract remove 948,113 - -0.1 948,189 + +0.1 948,201 + -0.1 948,223 + +0.1 948,312 + -2.0 948,322 + -1.5 948,345 + DVU0858 0.13 -0.6 948,394 - DVU0858 0.20 -1.7 948,403 + DVU0858 0.21 -1.8 948,571 + DVU0858 0.46 -1.7 948,579 - DVU0858 0.47 -2.0 948,603 - DVU0858 0.50 -1.7 948,664 - DVU0858 0.59 -1.8 948,664 - DVU0858 0.59 -2.3 948,794 - DVU0858 0.78 -1.9 948,795 - DVU0858 0.79 -3.1 948,854 - DVU0858 0.87 -0.6 948,894 + +0.4 948,894 + -3.9 948,902 - -1.7 948,925 + -1.8 948,960 - -1.2 948,974 + -1.4 949,042 - +0.1 949,107 - DORF7824 0.24 -0.2 949,109 + DORF7824 0.25 +0.6 949,112 - DORF7824 0.26 -0.5 949,247 - DORF7824 0.66 -0.2 949,264 + DORF7824 0.71 -0.4 949,264 + DORF7824 0.71 -0.5 949,310 + DORF7824 0.85 +0.1 949,351 + -0.6 949,419 - +0.6 949,507 - DVU0859 0.10 -0.1 949,562 + DVU0859 0.15 -1.1 949,568 - DVU0859 0.15 +0.4 949,783 + DVU0859 0.32 -0.6 949,800 - DVU0859 0.33 -1.2 949,806 + DVU0859 0.34 -1.3 949,857 - DVU0859 0.38 -0.5 949,937 + DVU0859 0.44 +0.4
Or see this region's nucleotide sequence