Strain Fitness in Sinorhizobium meliloti 1021 around SMc01957

Experiment: D-Mannitol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMc01957 and SMc01994 are separated by 564 nucleotides SMc01957: SMc01957 - hypothetical protein, at 2,680,164 to 2,680,478 SMc01957 SMc01994: SMc01994 - transposase ISRM1, at 2,681,043 to 2,681,873 SMc01994 Position (kb) 2680 2681Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2679.252 kb on + strandat 2679.293 kb on + strandat 2679.314 kb on + strandat 2679.315 kb on - strandat 2679.369 kb on + strandat 2679.406 kb on + strandat 2679.407 kb on - strandat 2679.471 kb on + strandat 2679.484 kb on + strandat 2679.512 kb on + strandat 2679.512 kb on + strandat 2679.644 kb on + strandat 2679.664 kb on + strandat 2679.664 kb on + strandat 2679.788 kb on + strandat 2679.789 kb on - strandat 2679.795 kb on + strandat 2679.870 kb on - strandat 2679.960 kb on + strandat 2679.960 kb on + strandat 2679.961 kb on - strandat 2679.966 kb on - strandat 2680.000 kb on + strandat 2680.000 kb on + strandat 2680.000 kb on + strandat 2680.001 kb on - strandat 2680.001 kb on - strandat 2680.001 kb on - strandat 2680.147 kb on + strandat 2680.294 kb on + strand, within SMc01957at 2680.295 kb on - strand, within SMc01957at 2680.394 kb on + strand, within SMc01957at 2680.394 kb on + strand, within SMc01957at 2680.394 kb on + strand, within SMc01957at 2680.394 kb on + strand, within SMc01957at 2680.438 kb on + strand, within SMc01957at 2680.455 kb on + strandat 2680.491 kb on + strandat 2680.493 kb on + strandat 2680.494 kb on - strandat 2680.525 kb on + strandat 2680.540 kb on + strandat 2680.541 kb on - strandat 2680.541 kb on - strandat 2680.653 kb on + strandat 2680.654 kb on - strandat 2680.665 kb on + strandat 2680.666 kb on - strandat 2680.666 kb on - strandat 2680.709 kb on + strandat 2680.712 kb on + strandat 2680.790 kb on - strandat 2680.819 kb on + strandat 2680.834 kb on + strandat 2680.834 kb on + strandat 2680.834 kb on + strandat 2680.835 kb on - strandat 2680.835 kb on - strandat 2680.863 kb on + strandat 2680.864 kb on - strandat 2680.905 kb on + strandat 2680.929 kb on + strandat 2680.929 kb on + strandat 2680.929 kb on + strandat 2680.930 kb on - strandat 2680.930 kb on - strandat 2680.932 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannitol (C)
remove
2,679,252 + +0.1
2,679,293 + -0.0
2,679,314 + +0.0
2,679,315 - +0.5
2,679,369 + -2.0
2,679,406 + -0.9
2,679,407 - +0.9
2,679,471 + +0.5
2,679,484 + +0.3
2,679,512 + +0.2
2,679,512 + +0.2
2,679,644 + +0.1
2,679,664 + -0.4
2,679,664 + -0.6
2,679,788 + +0.7
2,679,789 - +0.2
2,679,795 + -0.0
2,679,870 - +0.6
2,679,960 + -0.9
2,679,960 + +0.1
2,679,961 - -0.3
2,679,966 - -0.2
2,680,000 + +1.8
2,680,000 + -0.2
2,680,000 + +0.4
2,680,001 - +0.2
2,680,001 - -0.8
2,680,001 - +0.3
2,680,147 + -0.3
2,680,294 + SMc01957 0.41 -0.3
2,680,295 - SMc01957 0.42 -0.5
2,680,394 + SMc01957 0.73 -0.8
2,680,394 + SMc01957 0.73 -0.3
2,680,394 + SMc01957 0.73 -0.3
2,680,394 + SMc01957 0.73 -2.1
2,680,438 + SMc01957 0.87 -0.2
2,680,455 + -0.6
2,680,491 + -0.3
2,680,493 + +0.7
2,680,494 - +0.5
2,680,525 + +0.1
2,680,540 + -0.3
2,680,541 - -0.3
2,680,541 - +1.2
2,680,653 + -0.5
2,680,654 - +0.3
2,680,665 + -0.4
2,680,666 - -0.6
2,680,666 - +0.8
2,680,709 + -0.6
2,680,712 + -0.2
2,680,790 - -0.4
2,680,819 + +0.3
2,680,834 + +0.9
2,680,834 + +0.5
2,680,834 + -0.3
2,680,835 - +0.9
2,680,835 - -1.6
2,680,863 + -0.4
2,680,864 - +0.0
2,680,905 + -0.0
2,680,929 + +0.6
2,680,929 + -2.9
2,680,929 + +1.8
2,680,930 - +0.2
2,680,930 - -0.9
2,680,932 - -0.2

Or see this region's nucleotide sequence