Experiment: D-Mannitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21448 and SM_b21449 are separated by 4 nucleotides SM_b21449 and SM_b21450 are separated by 194 nucleotides SM_b21450 and SM_b21452 are separated by 184 nucleotides SM_b21452 and SM_b21454 are separated by 266 nucleotides
SM_b21448: SM_b21448 - DNA polymerase related protein, at 1,378,745 to 1,379,386
_b21448
SM_b21449: SM_b21449 - glutathione S-transferase, at 1,379,391 to 1,380,113
_b21449
SM_b21450: SM_b21450 - hypothetical protein, at 1,380,308 to 1,380,847
_b21450
SM_b21452: SM_b21452 - hypothetical protein, at 1,381,032 to 1,381,556
_b21452
SM_b21454: SM_b21454 - hypothetical protein, at 1,381,823 to 1,382,137
_b21454
Position (kb)
1380
1381 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1379.470 kb on + strand, within SM_b21449 at 1379.470 kb on + strand, within SM_b21449 at 1379.539 kb on + strand, within SM_b21449 at 1379.540 kb on - strand, within SM_b21449 at 1379.630 kb on + strand, within SM_b21449 at 1379.631 kb on - strand, within SM_b21449 at 1379.631 kb on - strand, within SM_b21449 at 1379.674 kb on + strand, within SM_b21449 at 1379.831 kb on + strand, within SM_b21449 at 1379.832 kb on - strand, within SM_b21449 at 1379.832 kb on - strand, within SM_b21449 at 1379.832 kb on - strand, within SM_b21449 at 1379.910 kb on + strand, within SM_b21449 at 1379.911 kb on - strand, within SM_b21449 at 1380.029 kb on - strand, within SM_b21449 at 1380.098 kb on - strand at 1380.106 kb on + strand at 1380.106 kb on + strand at 1380.106 kb on + strand at 1380.107 kb on - strand at 1380.209 kb on + strand at 1380.210 kb on - strand at 1380.219 kb on + strand at 1380.243 kb on - strand at 1380.243 kb on - strand at 1380.380 kb on + strand, within SM_b21450 at 1380.423 kb on + strand, within SM_b21450 at 1380.424 kb on - strand, within SM_b21450 at 1380.491 kb on + strand, within SM_b21450 at 1380.492 kb on - strand, within SM_b21450 at 1380.594 kb on + strand, within SM_b21450 at 1380.594 kb on + strand, within SM_b21450 at 1380.594 kb on + strand, within SM_b21450 at 1380.982 kb on + strand at 1380.982 kb on + strand at 1380.983 kb on - strand at 1381.000 kb on + strand at 1381.001 kb on - strand at 1381.001 kb on - strand at 1381.001 kb on - strand at 1381.001 kb on - strand at 1381.048 kb on + strand at 1381.049 kb on - strand at 1381.063 kb on + strand at 1381.063 kb on + strand at 1381.064 kb on - strand at 1381.064 kb on - strand at 1381.178 kb on + strand, within SM_b21452 at 1381.178 kb on + strand, within SM_b21452 at 1381.179 kb on - strand, within SM_b21452 at 1381.179 kb on - strand, within SM_b21452 at 1381.737 kb on + strand at 1381.738 kb on - strand at 1381.738 kb on - strand at 1381.738 kb on - strand at 1381.811 kb on + strand at 1381.812 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannitol (C) remove 1,379,470 + SM_b21449 0.11 +0.3 1,379,470 + SM_b21449 0.11 -0.1 1,379,539 + SM_b21449 0.20 +0.0 1,379,540 - SM_b21449 0.21 +0.7 1,379,630 + SM_b21449 0.33 -0.1 1,379,631 - SM_b21449 0.33 -2.3 1,379,631 - SM_b21449 0.33 +0.4 1,379,674 + SM_b21449 0.39 -0.2 1,379,831 + SM_b21449 0.61 +0.2 1,379,832 - SM_b21449 0.61 +0.2 1,379,832 - SM_b21449 0.61 +1.0 1,379,832 - SM_b21449 0.61 -0.2 1,379,910 + SM_b21449 0.72 -0.4 1,379,911 - SM_b21449 0.72 -1.7 1,380,029 - SM_b21449 0.88 -0.6 1,380,098 - +0.6 1,380,106 + -0.4 1,380,106 + -0.1 1,380,106 + -0.6 1,380,107 - -0.1 1,380,209 + +0.2 1,380,210 - -0.7 1,380,219 + +0.7 1,380,243 - +0.5 1,380,243 - -0.7 1,380,380 + SM_b21450 0.13 -1.9 1,380,423 + SM_b21450 0.21 +0.4 1,380,424 - SM_b21450 0.21 +0.2 1,380,491 + SM_b21450 0.34 -0.4 1,380,492 - SM_b21450 0.34 -0.4 1,380,594 + SM_b21450 0.53 -0.1 1,380,594 + SM_b21450 0.53 -0.0 1,380,594 + SM_b21450 0.53 -1.3 1,380,982 + -0.4 1,380,982 + +0.3 1,380,983 - -0.5 1,381,000 + +1.3 1,381,001 - +1.7 1,381,001 - -0.5 1,381,001 - +0.4 1,381,001 - +0.5 1,381,048 + +0.1 1,381,049 - -1.5 1,381,063 + +2.6 1,381,063 + -1.2 1,381,064 - +0.3 1,381,064 - -0.8 1,381,178 + SM_b21452 0.28 -0.7 1,381,178 + SM_b21452 0.28 -0.9 1,381,179 - SM_b21452 0.28 +0.8 1,381,179 - SM_b21452 0.28 -0.2 1,381,737 + -0.2 1,381,738 - +0.1 1,381,738 - -0.7 1,381,738 - -0.2 1,381,811 + -0.6 1,381,812 - -0.6
Or see this region's nucleotide sequence