Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21450

Experiment: D-Mannitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21448 and SM_b21449 are separated by 4 nucleotidesSM_b21449 and SM_b21450 are separated by 194 nucleotidesSM_b21450 and SM_b21452 are separated by 184 nucleotidesSM_b21452 and SM_b21454 are separated by 266 nucleotides SM_b21448: SM_b21448 - DNA polymerase related protein, at 1,378,745 to 1,379,386 _b21448 SM_b21449: SM_b21449 - glutathione S-transferase, at 1,379,391 to 1,380,113 _b21449 SM_b21450: SM_b21450 - hypothetical protein, at 1,380,308 to 1,380,847 _b21450 SM_b21452: SM_b21452 - hypothetical protein, at 1,381,032 to 1,381,556 _b21452 SM_b21454: SM_b21454 - hypothetical protein, at 1,381,823 to 1,382,137 _b21454 Position (kb) 1380 1381Strain fitness (log2 ratio) -2 -1 0 1 2at 1379.470 kb on + strand, within SM_b21449at 1379.470 kb on + strand, within SM_b21449at 1379.539 kb on + strand, within SM_b21449at 1379.540 kb on - strand, within SM_b21449at 1379.630 kb on + strand, within SM_b21449at 1379.631 kb on - strand, within SM_b21449at 1379.631 kb on - strand, within SM_b21449at 1379.674 kb on + strand, within SM_b21449at 1379.831 kb on + strand, within SM_b21449at 1379.832 kb on - strand, within SM_b21449at 1379.832 kb on - strand, within SM_b21449at 1379.832 kb on - strand, within SM_b21449at 1379.910 kb on + strand, within SM_b21449at 1379.911 kb on - strand, within SM_b21449at 1380.029 kb on - strand, within SM_b21449at 1380.098 kb on - strandat 1380.106 kb on + strandat 1380.106 kb on + strandat 1380.106 kb on + strandat 1380.107 kb on - strandat 1380.209 kb on + strandat 1380.210 kb on - strandat 1380.219 kb on + strandat 1380.243 kb on - strandat 1380.243 kb on - strandat 1380.380 kb on + strand, within SM_b21450at 1380.423 kb on + strand, within SM_b21450at 1380.424 kb on - strand, within SM_b21450at 1380.491 kb on + strand, within SM_b21450at 1380.492 kb on - strand, within SM_b21450at 1380.594 kb on + strand, within SM_b21450at 1380.594 kb on + strand, within SM_b21450at 1380.594 kb on + strand, within SM_b21450at 1380.982 kb on + strandat 1380.982 kb on + strandat 1380.983 kb on - strandat 1381.000 kb on + strandat 1381.001 kb on - strandat 1381.001 kb on - strandat 1381.001 kb on - strandat 1381.001 kb on - strandat 1381.048 kb on + strandat 1381.049 kb on - strandat 1381.063 kb on + strandat 1381.063 kb on + strandat 1381.064 kb on - strandat 1381.064 kb on - strandat 1381.178 kb on + strand, within SM_b21452at 1381.178 kb on + strand, within SM_b21452at 1381.179 kb on - strand, within SM_b21452at 1381.179 kb on - strand, within SM_b21452at 1381.737 kb on + strandat 1381.738 kb on - strandat 1381.738 kb on - strandat 1381.738 kb on - strandat 1381.811 kb on + strandat 1381.812 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannitol (C)
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1,379,470 + SM_b21449 0.11 +0.3
1,379,470 + SM_b21449 0.11 -0.1
1,379,539 + SM_b21449 0.20 +0.0
1,379,540 - SM_b21449 0.21 +0.7
1,379,630 + SM_b21449 0.33 -0.1
1,379,631 - SM_b21449 0.33 -2.3
1,379,631 - SM_b21449 0.33 +0.4
1,379,674 + SM_b21449 0.39 -0.2
1,379,831 + SM_b21449 0.61 +0.2
1,379,832 - SM_b21449 0.61 +0.2
1,379,832 - SM_b21449 0.61 +1.0
1,379,832 - SM_b21449 0.61 -0.2
1,379,910 + SM_b21449 0.72 -0.4
1,379,911 - SM_b21449 0.72 -1.7
1,380,029 - SM_b21449 0.88 -0.6
1,380,098 - +0.6
1,380,106 + -0.4
1,380,106 + -0.1
1,380,106 + -0.6
1,380,107 - -0.1
1,380,209 + +0.2
1,380,210 - -0.7
1,380,219 + +0.7
1,380,243 - +0.5
1,380,243 - -0.7
1,380,380 + SM_b21450 0.13 -1.9
1,380,423 + SM_b21450 0.21 +0.4
1,380,424 - SM_b21450 0.21 +0.2
1,380,491 + SM_b21450 0.34 -0.4
1,380,492 - SM_b21450 0.34 -0.4
1,380,594 + SM_b21450 0.53 -0.1
1,380,594 + SM_b21450 0.53 -0.0
1,380,594 + SM_b21450 0.53 -1.3
1,380,982 + -0.4
1,380,982 + +0.3
1,380,983 - -0.5
1,381,000 + +1.3
1,381,001 - +1.7
1,381,001 - -0.5
1,381,001 - +0.4
1,381,001 - +0.5
1,381,048 + +0.1
1,381,049 - -1.5
1,381,063 + +2.6
1,381,063 + -1.2
1,381,064 - +0.3
1,381,064 - -0.8
1,381,178 + SM_b21452 0.28 -0.7
1,381,178 + SM_b21452 0.28 -0.9
1,381,179 - SM_b21452 0.28 +0.8
1,381,179 - SM_b21452 0.28 -0.2
1,381,737 + -0.2
1,381,738 - +0.1
1,381,738 - -0.7
1,381,738 - -0.2
1,381,811 + -0.6
1,381,812 - -0.6

Or see this region's nucleotide sequence