Experiment: D-Mannitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21151 and SM_b21152 are separated by 88 nucleotides SM_b21152 and SM_b21153 are separated by 2 nucleotides SM_b21153 and SM_b21154 are separated by 150 nucleotides
SM_b21151: SM_b21151 - substrate-binding protein of a sugar uptake ABC transporter system, at 895,555 to 896,784
_b21151
SM_b21152: SM_b21152 - sugar uptake ABC transporter ATP-binding protein, at 896,873 to 898,006
_b21152
SM_b21153: SM_b21153 - acetyltransferase, at 898,009 to 898,509
_b21153
SM_b21154: SM_b21154 - hypothetical protein, at 898,660 to 899,043
_b21154
Position (kb) 896
897
898
899 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 895.906 kb on + strand, within SM_b21151 at 895.907 kb on - strand, within SM_b21151 at 895.914 kb on + strand, within SM_b21151 at 895.914 kb on + strand, within SM_b21151 at 895.960 kb on - strand, within SM_b21151 at 895.985 kb on - strand, within SM_b21151 at 896.158 kb on + strand, within SM_b21151 at 896.160 kb on + strand, within SM_b21151 at 896.161 kb on - strand, within SM_b21151 at 896.161 kb on - strand, within SM_b21151 at 896.194 kb on - strand, within SM_b21151 at 896.194 kb on - strand, within SM_b21151 at 896.194 kb on - strand, within SM_b21151 at 896.194 kb on - strand, within SM_b21151 at 896.236 kb on + strand, within SM_b21151 at 896.236 kb on + strand, within SM_b21151 at 896.236 kb on + strand, within SM_b21151 at 896.278 kb on + strand, within SM_b21151 at 896.278 kb on + strand, within SM_b21151 at 896.388 kb on - strand, within SM_b21151 at 896.625 kb on + strand, within SM_b21151 at 896.636 kb on + strand, within SM_b21151 at 896.636 kb on + strand, within SM_b21151 at 896.641 kb on + strand, within SM_b21151 at 896.642 kb on - strand, within SM_b21151 at 896.642 kb on - strand, within SM_b21151 at 896.776 kb on + strand at 896.777 kb on - strand at 896.783 kb on - strand at 896.783 kb on - strand at 896.783 kb on - strand at 896.783 kb on - strand at 896.783 kb on - strand at 896.783 kb on - strand at 896.830 kb on + strand at 896.830 kb on + strand at 896.830 kb on + strand at 896.830 kb on + strand at 896.872 kb on - strand at 896.918 kb on + strand at 896.918 kb on + strand at 896.918 kb on + strand at 896.919 kb on - strand at 896.919 kb on - strand at 896.919 kb on - strand at 896.919 kb on - strand at 897.122 kb on + strand, within SM_b21152 at 897.122 kb on + strand, within SM_b21152 at 897.122 kb on + strand, within SM_b21152 at 897.123 kb on - strand, within SM_b21152 at 897.123 kb on - strand, within SM_b21152 at 897.123 kb on - strand, within SM_b21152 at 897.131 kb on + strand, within SM_b21152 at 897.139 kb on + strand, within SM_b21152 at 897.232 kb on - strand, within SM_b21152 at 897.232 kb on - strand, within SM_b21152 at 897.437 kb on + strand, within SM_b21152 at 897.437 kb on + strand, within SM_b21152 at 897.537 kb on - strand, within SM_b21152 at 897.537 kb on - strand, within SM_b21152 at 897.553 kb on + strand, within SM_b21152 at 897.554 kb on - strand, within SM_b21152 at 897.555 kb on + strand, within SM_b21152 at 897.555 kb on + strand, within SM_b21152 at 897.555 kb on + strand, within SM_b21152 at 897.556 kb on - strand, within SM_b21152 at 897.644 kb on + strand, within SM_b21152 at 897.644 kb on + strand, within SM_b21152 at 897.644 kb on + strand, within SM_b21152 at 897.706 kb on - strand, within SM_b21152 at 897.777 kb on + strand, within SM_b21152 at 897.809 kb on + strand, within SM_b21152 at 897.810 kb on - strand, within SM_b21152 at 897.810 kb on - strand, within SM_b21152 at 897.839 kb on + strand, within SM_b21152 at 897.839 kb on + strand, within SM_b21152 at 897.840 kb on - strand, within SM_b21152 at 897.840 kb on - strand, within SM_b21152 at 898.004 kb on + strand at 898.005 kb on - strand at 898.270 kb on + strand, within SM_b21153 at 898.271 kb on - strand, within SM_b21153 at 898.687 kb on + strand at 898.687 kb on + strand at 898.687 kb on + strand at 898.687 kb on + strand at 898.687 kb on + strand at 898.688 kb on - strand at 898.688 kb on - strand at 898.688 kb on - strand at 898.688 kb on - strand at 898.688 kb on - strand at 898.688 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannitol (C) remove 895,906 + SM_b21151 0.29 +0.1 895,907 - SM_b21151 0.29 -0.7 895,914 + SM_b21151 0.29 -0.3 895,914 + SM_b21151 0.29 +0.1 895,960 - SM_b21151 0.33 -1.5 895,985 - SM_b21151 0.35 -1.1 896,158 + SM_b21151 0.49 -0.8 896,160 + SM_b21151 0.49 +0.0 896,161 - SM_b21151 0.49 -0.9 896,161 - SM_b21151 0.49 +0.7 896,194 - SM_b21151 0.52 -0.4 896,194 - SM_b21151 0.52 +0.1 896,194 - SM_b21151 0.52 +0.5 896,194 - SM_b21151 0.52 -0.4 896,236 + SM_b21151 0.55 -2.1 896,236 + SM_b21151 0.55 +0.3 896,236 + SM_b21151 0.55 -0.5 896,278 + SM_b21151 0.59 +0.6 896,278 + SM_b21151 0.59 +0.7 896,388 - SM_b21151 0.68 -0.1 896,625 + SM_b21151 0.87 +0.5 896,636 + SM_b21151 0.88 +0.1 896,636 + SM_b21151 0.88 +0.6 896,641 + SM_b21151 0.88 -0.4 896,642 - SM_b21151 0.88 -0.3 896,642 - SM_b21151 0.88 -0.3 896,776 + -1.2 896,777 - +0.7 896,783 - -1.5 896,783 - -0.2 896,783 - -0.1 896,783 - +0.8 896,783 - -0.8 896,783 - +0.0 896,830 + +0.1 896,830 + -0.9 896,830 + -0.4 896,830 + +1.3 896,872 - +0.1 896,918 + -0.2 896,918 + -0.3 896,918 + -0.0 896,919 - +0.7 896,919 - -0.3 896,919 - -0.3 896,919 - -0.0 897,122 + SM_b21152 0.22 -0.1 897,122 + SM_b21152 0.22 +0.4 897,122 + SM_b21152 0.22 -0.3 897,123 - SM_b21152 0.22 +0.3 897,123 - SM_b21152 0.22 -2.1 897,123 - SM_b21152 0.22 +0.3 897,131 + SM_b21152 0.23 +0.4 897,139 + SM_b21152 0.23 +0.4 897,232 - SM_b21152 0.32 -0.7 897,232 - SM_b21152 0.32 +0.2 897,437 + SM_b21152 0.50 -0.7 897,437 + SM_b21152 0.50 -0.1 897,537 - SM_b21152 0.59 +0.2 897,537 - SM_b21152 0.59 +2.9 897,553 + SM_b21152 0.60 -0.2 897,554 - SM_b21152 0.60 -0.3 897,555 + SM_b21152 0.60 +0.1 897,555 + SM_b21152 0.60 -0.0 897,555 + SM_b21152 0.60 -0.0 897,556 - SM_b21152 0.60 -0.5 897,644 + SM_b21152 0.68 +0.5 897,644 + SM_b21152 0.68 -0.0 897,644 + SM_b21152 0.68 -0.8 897,706 - SM_b21152 0.73 -0.2 897,777 + SM_b21152 0.80 -0.3 897,809 + SM_b21152 0.83 +0.6 897,810 - SM_b21152 0.83 -0.3 897,810 - SM_b21152 0.83 -0.3 897,839 + SM_b21152 0.85 -0.4 897,839 + SM_b21152 0.85 -0.0 897,840 - SM_b21152 0.85 -0.1 897,840 - SM_b21152 0.85 +0.1 898,004 + +0.2 898,005 - -0.1 898,270 + SM_b21153 0.52 +0.9 898,271 - SM_b21153 0.52 +0.1 898,687 + -1.1 898,687 + +0.3 898,687 + -0.8 898,687 + +0.6 898,687 + +0.7 898,688 - -1.6 898,688 - -0.0 898,688 - -0.0 898,688 - +0.4 898,688 - -0.1 898,688 - -0.8
Or see this region's nucleotide sequence