Experiment: D-Mannitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20711 and SM_b20712 are separated by 239 nucleotides SM_b20712 and SM_b20713 are separated by 186 nucleotides
SM_b20711: SM_b20711 - hypothetical protein, at 1,513,278 to 1,514,090
_b20711
SM_b20712: SM_b20712 - rhizopine uptake ABC transporter substrate-binding protein precursor, at 1,514,330 to 1,515,259
_b20712
SM_b20713: SM_b20713 - sugar uptake ABC transporter ATP-binding protein, at 1,515,446 to 1,516,987
_b20713
Position (kb)
1514
1515
1516 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1513.635 kb on - strand, within SM_b20711 at 1513.983 kb on + strand, within SM_b20711 at 1514.070 kb on + strand at 1514.070 kb on + strand at 1514.070 kb on + strand at 1514.463 kb on - strand, within SM_b20712 at 1514.463 kb on - strand, within SM_b20712 at 1514.463 kb on - strand, within SM_b20712 at 1514.648 kb on + strand, within SM_b20712 at 1514.648 kb on + strand, within SM_b20712 at 1514.649 kb on - strand, within SM_b20712 at 1514.649 kb on - strand, within SM_b20712 at 1514.677 kb on + strand, within SM_b20712 at 1514.678 kb on - strand, within SM_b20712 at 1514.753 kb on - strand, within SM_b20712 at 1514.753 kb on - strand, within SM_b20712 at 1515.200 kb on + strand at 1515.200 kb on + strand at 1515.200 kb on + strand at 1515.201 kb on - strand at 1515.201 kb on - strand at 1515.201 kb on - strand at 1515.201 kb on - strand at 1515.201 kb on - strand at 1515.201 kb on - strand at 1515.229 kb on + strand at 1515.510 kb on - strand at 1515.662 kb on + strand, within SM_b20713 at 1515.662 kb on + strand, within SM_b20713 at 1515.663 kb on - strand, within SM_b20713 at 1515.663 kb on - strand, within SM_b20713 at 1515.665 kb on + strand, within SM_b20713 at 1516.041 kb on + strand, within SM_b20713 at 1516.042 kb on - strand, within SM_b20713 at 1516.088 kb on + strand, within SM_b20713 at 1516.088 kb on + strand, within SM_b20713 at 1516.089 kb on - strand, within SM_b20713 at 1516.157 kb on + strand, within SM_b20713 at 1516.157 kb on + strand, within SM_b20713 at 1516.157 kb on + strand, within SM_b20713 at 1516.157 kb on + strand, within SM_b20713 at 1516.157 kb on + strand, within SM_b20713 at 1516.158 kb on - strand, within SM_b20713 at 1516.158 kb on - strand, within SM_b20713 at 1516.159 kb on + strand, within SM_b20713
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannitol (C) remove 1,513,635 - SM_b20711 0.44 -0.1 1,513,983 + SM_b20711 0.87 -0.1 1,514,070 + +0.0 1,514,070 + +0.1 1,514,070 + -0.1 1,514,463 - SM_b20712 0.14 -0.9 1,514,463 - SM_b20712 0.14 -1.3 1,514,463 - SM_b20712 0.14 +2.5 1,514,648 + SM_b20712 0.34 -0.4 1,514,648 + SM_b20712 0.34 +0.7 1,514,649 - SM_b20712 0.34 +0.2 1,514,649 - SM_b20712 0.34 +0.6 1,514,677 + SM_b20712 0.37 +0.3 1,514,678 - SM_b20712 0.37 +1.2 1,514,753 - SM_b20712 0.45 +0.8 1,514,753 - SM_b20712 0.45 +1.7 1,515,200 + +0.3 1,515,200 + +1.2 1,515,200 + +1.0 1,515,201 - +1.3 1,515,201 - -0.4 1,515,201 - -0.9 1,515,201 - -0.5 1,515,201 - +1.1 1,515,201 - +0.0 1,515,229 + -1.1 1,515,510 - -2.0 1,515,662 + SM_b20713 0.14 -0.5 1,515,662 + SM_b20713 0.14 +0.1 1,515,663 - SM_b20713 0.14 -0.4 1,515,663 - SM_b20713 0.14 +0.1 1,515,665 + SM_b20713 0.14 +0.9 1,516,041 + SM_b20713 0.39 -0.6 1,516,042 - SM_b20713 0.39 +0.1 1,516,088 + SM_b20713 0.42 -0.3 1,516,088 + SM_b20713 0.42 -1.7 1,516,089 - SM_b20713 0.42 +2.1 1,516,157 + SM_b20713 0.46 +0.9 1,516,157 + SM_b20713 0.46 +2.5 1,516,157 + SM_b20713 0.46 -1.2 1,516,157 + SM_b20713 0.46 -0.2 1,516,157 + SM_b20713 0.46 -1.8 1,516,158 - SM_b20713 0.46 +0.5 1,516,158 - SM_b20713 0.46 -0.3 1,516,159 + SM_b20713 0.46 -0.0
Or see this region's nucleotide sequence