Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20292

Experiment: D-Mannitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20291 and SM_b20292 are separated by 187 nucleotidesSM_b20292 and SM_b20293 are separated by 311 nucleotidesSM_b20293 and SM_b20294 are separated by 131 nucleotides SM_b20291: SM_b20291 - hypothetical protein, at 296,737 to 299,220 _b20291 SM_b20292: SM_b20292 - immunogenic protein, at 299,408 to 300,391 _b20292 SM_b20293: SM_b20293 - hypothetical protein, at 300,703 to 301,062 _b20293 SM_b20294: SM_b20294 - transcriptional regulator NanR, at 301,194 to 301,895 _b20294 Position (kb) 299 300 301Strain fitness (log2 ratio) -1 0 1 2at 298.832 kb on + strand, within SM_b20291at 298.832 kb on + strand, within SM_b20291at 299.193 kb on - strandat 299.237 kb on - strandat 299.237 kb on - strandat 299.356 kb on + strandat 299.356 kb on + strandat 299.409 kb on + strandat 299.409 kb on + strandat 299.409 kb on + strandat 299.433 kb on + strandat 299.568 kb on + strand, within SM_b20292at 299.652 kb on + strand, within SM_b20292at 299.686 kb on - strand, within SM_b20292at 299.770 kb on + strand, within SM_b20292at 299.797 kb on - strand, within SM_b20292at 300.008 kb on + strand, within SM_b20292at 300.103 kb on - strand, within SM_b20292at 300.258 kb on + strand, within SM_b20292at 300.262 kb on - strand, within SM_b20292at 300.374 kb on - strandat 300.374 kb on - strandat 300.394 kb on - strandat 300.394 kb on - strandat 300.440 kb on + strandat 300.441 kb on - strandat 300.528 kb on + strandat 300.528 kb on + strandat 300.529 kb on - strandat 300.560 kb on + strandat 300.560 kb on + strandat 300.561 kb on - strandat 300.586 kb on - strandat 300.713 kb on + strandat 300.714 kb on - strandat 300.718 kb on + strandat 300.752 kb on - strand, within SM_b20293at 300.849 kb on + strand, within SM_b20293at 301.060 kb on + strandat 301.061 kb on - strandat 301.061 kb on - strandat 301.273 kb on - strand, within SM_b20294at 301.357 kb on - strand, within SM_b20294

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannitol (C)
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298,832 + SM_b20291 0.84 +0.5
298,832 + SM_b20291 0.84 +0.1
299,193 - +0.4
299,237 - -0.5
299,237 - -0.5
299,356 + +0.9
299,356 + +0.5
299,409 + +0.3
299,409 + -0.6
299,409 + -0.1
299,433 + -0.7
299,568 + SM_b20292 0.16 +0.0
299,652 + SM_b20292 0.25 -0.4
299,686 - SM_b20292 0.28 +0.0
299,770 + SM_b20292 0.37 -0.1
299,797 - SM_b20292 0.40 +1.1
300,008 + SM_b20292 0.61 +0.1
300,103 - SM_b20292 0.71 +0.1
300,258 + SM_b20292 0.86 +1.5
300,262 - SM_b20292 0.87 +0.4
300,374 - +0.3
300,374 - +0.4
300,394 - +0.2
300,394 - +0.2
300,440 + -0.2
300,441 - -0.5
300,528 + +0.1
300,528 + +1.3
300,529 - -0.5
300,560 + +0.5
300,560 + +0.1
300,561 - +0.7
300,586 - +0.4
300,713 + -0.9
300,714 - +0.0
300,718 + +0.8
300,752 - SM_b20293 0.14 +1.9
300,849 + SM_b20293 0.41 +0.2
301,060 + +0.0
301,061 - -0.0
301,061 - +0.6
301,273 - SM_b20294 0.11 -0.3
301,357 - SM_b20294 0.23 -0.8

Or see this region's nucleotide sequence