Experiment: D-Mannitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20291 and SM_b20292 are separated by 187 nucleotides SM_b20292 and SM_b20293 are separated by 311 nucleotides SM_b20293 and SM_b20294 are separated by 131 nucleotides
SM_b20291: SM_b20291 - hypothetical protein, at 296,737 to 299,220
_b20291
SM_b20292: SM_b20292 - immunogenic protein, at 299,408 to 300,391
_b20292
SM_b20293: SM_b20293 - hypothetical protein, at 300,703 to 301,062
_b20293
SM_b20294: SM_b20294 - transcriptional regulator NanR, at 301,194 to 301,895
_b20294
Position (kb)
299
300
301 Strain fitness (log2 ratio)
-1
0
1
2 at 298.832 kb on + strand, within SM_b20291 at 298.832 kb on + strand, within SM_b20291 at 299.193 kb on - strand at 299.237 kb on - strand at 299.237 kb on - strand at 299.356 kb on + strand at 299.356 kb on + strand at 299.409 kb on + strand at 299.409 kb on + strand at 299.409 kb on + strand at 299.433 kb on + strand at 299.568 kb on + strand, within SM_b20292 at 299.652 kb on + strand, within SM_b20292 at 299.686 kb on - strand, within SM_b20292 at 299.770 kb on + strand, within SM_b20292 at 299.797 kb on - strand, within SM_b20292 at 300.008 kb on + strand, within SM_b20292 at 300.103 kb on - strand, within SM_b20292 at 300.258 kb on + strand, within SM_b20292 at 300.262 kb on - strand, within SM_b20292 at 300.374 kb on - strand at 300.374 kb on - strand at 300.394 kb on - strand at 300.394 kb on - strand at 300.440 kb on + strand at 300.441 kb on - strand at 300.528 kb on + strand at 300.528 kb on + strand at 300.529 kb on - strand at 300.560 kb on + strand at 300.560 kb on + strand at 300.561 kb on - strand at 300.586 kb on - strand at 300.713 kb on + strand at 300.714 kb on - strand at 300.718 kb on + strand at 300.752 kb on - strand, within SM_b20293 at 300.849 kb on + strand, within SM_b20293 at 301.060 kb on + strand at 301.061 kb on - strand at 301.061 kb on - strand at 301.273 kb on - strand, within SM_b20294 at 301.357 kb on - strand, within SM_b20294
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannitol (C) remove 298,832 + SM_b20291 0.84 +0.5 298,832 + SM_b20291 0.84 +0.1 299,193 - +0.4 299,237 - -0.5 299,237 - -0.5 299,356 + +0.9 299,356 + +0.5 299,409 + +0.3 299,409 + -0.6 299,409 + -0.1 299,433 + -0.7 299,568 + SM_b20292 0.16 +0.0 299,652 + SM_b20292 0.25 -0.4 299,686 - SM_b20292 0.28 +0.0 299,770 + SM_b20292 0.37 -0.1 299,797 - SM_b20292 0.40 +1.1 300,008 + SM_b20292 0.61 +0.1 300,103 - SM_b20292 0.71 +0.1 300,258 + SM_b20292 0.86 +1.5 300,262 - SM_b20292 0.87 +0.4 300,374 - +0.3 300,374 - +0.4 300,394 - +0.2 300,394 - +0.2 300,440 + -0.2 300,441 - -0.5 300,528 + +0.1 300,528 + +1.3 300,529 - -0.5 300,560 + +0.5 300,560 + +0.1 300,561 - +0.7 300,586 - +0.4 300,713 + -0.9 300,714 - +0.0 300,718 + +0.8 300,752 - SM_b20293 0.14 +1.9 300,849 + SM_b20293 0.41 +0.2 301,060 + +0.0 301,061 - -0.0 301,061 - +0.6 301,273 - SM_b20294 0.11 -0.3 301,357 - SM_b20294 0.23 -0.8
Or see this region's nucleotide sequence