Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20087

Experiment: D-Mannitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20084 and SM_b20085 are separated by 51 nucleotidesSM_b20085 and SM_b20086 are separated by 197 nucleotidesSM_b20086 and SM_b20087 are separated by 22 nucleotidesSM_b20087 and SM_b20088 are separated by 154 nucleotides SM_b20084: SM_b20084 - hypothetical protein, at 94,903 to 95,076 _b20084 SM_b20085: SM_b20085 - hypothetical protein, at 95,128 to 95,274 _b20085 SM_b20086: SM_b20086 - hypothetical protein, at 95,472 to 95,774 _b20086 SM_b20087: SM_b20087 - hypothetical protein, at 95,797 to 96,402 _b20087 SM_b20088: SM_b20088 - hypothetical protein, at 96,557 to 98,533 _b20088 Position (kb) 95 96 97Strain fitness (log2 ratio) -2 -1 0 1at 94.829 kb on + strandat 94.830 kb on - strandat 94.856 kb on - strandat 94.904 kb on + strandat 94.904 kb on + strandat 94.957 kb on - strand, within SM_b20084at 94.957 kb on - strand, within SM_b20084at 94.957 kb on - strand, within SM_b20084at 94.957 kb on - strand, within SM_b20084at 94.970 kb on + strand, within SM_b20084at 94.979 kb on - strand, within SM_b20084at 95.036 kb on - strand, within SM_b20084at 95.046 kb on + strand, within SM_b20084at 95.046 kb on + strand, within SM_b20084at 95.046 kb on + strand, within SM_b20084at 95.058 kb on + strand, within SM_b20084at 95.076 kb on + strandat 95.077 kb on - strandat 95.260 kb on + strandat 95.268 kb on + strandat 95.269 kb on - strandat 95.694 kb on - strand, within SM_b20086at 95.694 kb on - strand, within SM_b20086at 95.716 kb on - strand, within SM_b20086at 95.762 kb on - strandat 95.828 kb on - strandat 95.887 kb on - strand, within SM_b20087at 95.942 kb on + strand, within SM_b20087at 95.942 kb on + strand, within SM_b20087at 95.943 kb on - strand, within SM_b20087at 96.029 kb on + strand, within SM_b20087at 96.030 kb on - strand, within SM_b20087at 96.281 kb on + strand, within SM_b20087at 96.282 kb on - strand, within SM_b20087at 96.303 kb on + strand, within SM_b20087at 96.348 kb on + strandat 96.349 kb on - strandat 96.512 kb on + strandat 96.513 kb on - strandat 96.513 kb on - strandat 96.749 kb on + strandat 96.750 kb on - strandat 96.750 kb on - strandat 96.750 kb on - strandat 96.750 kb on - strandat 96.751 kb on + strandat 96.751 kb on + strandat 96.752 kb on - strandat 96.752 kb on - strandat 96.752 kb on - strandat 96.797 kb on - strand, within SM_b20088at 96.860 kb on + strand, within SM_b20088at 96.860 kb on + strand, within SM_b20088at 96.860 kb on + strand, within SM_b20088at 96.861 kb on - strand, within SM_b20088at 96.861 kb on - strand, within SM_b20088at 96.861 kb on - strand, within SM_b20088at 96.861 kb on - strand, within SM_b20088at 96.861 kb on - strand, within SM_b20088at 96.866 kb on + strand, within SM_b20088at 96.867 kb on - strand, within SM_b20088at 96.868 kb on + strand, within SM_b20088at 96.869 kb on - strand, within SM_b20088at 96.937 kb on + strand, within SM_b20088at 96.937 kb on + strand, within SM_b20088at 96.938 kb on - strand, within SM_b20088at 96.999 kb on + strand, within SM_b20088at 97.026 kb on + strand, within SM_b20088at 97.187 kb on + strand, within SM_b20088

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannitol (C)
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94,829 + +0.0
94,830 - -0.0
94,856 - +0.8
94,904 + +0.3
94,904 + +0.7
94,957 - SM_b20084 0.31 -0.2
94,957 - SM_b20084 0.31 +0.8
94,957 - SM_b20084 0.31 +0.1
94,957 - SM_b20084 0.31 -0.5
94,970 + SM_b20084 0.39 -0.2
94,979 - SM_b20084 0.44 -0.7
95,036 - SM_b20084 0.76 +1.2
95,046 + SM_b20084 0.82 -1.0
95,046 + SM_b20084 0.82 -1.1
95,046 + SM_b20084 0.82 +0.4
95,058 + SM_b20084 0.89 -0.7
95,076 + -0.4
95,077 - +0.3
95,260 + -0.2
95,268 + -0.5
95,269 - -0.0
95,694 - SM_b20086 0.73 +0.2
95,694 - SM_b20086 0.73 +0.2
95,716 - SM_b20086 0.81 -0.9
95,762 - -2.2
95,828 - -0.0
95,887 - SM_b20087 0.15 -0.4
95,942 + SM_b20087 0.24 -0.8
95,942 + SM_b20087 0.24 -0.2
95,943 - SM_b20087 0.24 -0.6
96,029 + SM_b20087 0.38 -0.9
96,030 - SM_b20087 0.38 +0.7
96,281 + SM_b20087 0.80 -0.1
96,282 - SM_b20087 0.80 -1.4
96,303 + SM_b20087 0.83 -0.8
96,348 + +0.5
96,349 - +0.3
96,512 + -0.3
96,513 - -0.3
96,513 - -0.3
96,749 + -0.0
96,750 - +1.1
96,750 - -0.5
96,750 - +0.4
96,750 - -0.0
96,751 + -0.8
96,751 + -0.9
96,752 - +0.7
96,752 - -0.2
96,752 - +0.4
96,797 - SM_b20088 0.12 +0.1
96,860 + SM_b20088 0.15 -1.1
96,860 + SM_b20088 0.15 +0.8
96,860 + SM_b20088 0.15 -2.4
96,861 - SM_b20088 0.15 -0.5
96,861 - SM_b20088 0.15 -1.8
96,861 - SM_b20088 0.15 -0.8
96,861 - SM_b20088 0.15 -0.4
96,861 - SM_b20088 0.15 -2.0
96,866 + SM_b20088 0.16 +0.5
96,867 - SM_b20088 0.16 -0.9
96,868 + SM_b20088 0.16 -0.2
96,869 - SM_b20088 0.16 -0.2
96,937 + SM_b20088 0.19 -0.4
96,937 + SM_b20088 0.19 -0.1
96,938 - SM_b20088 0.19 -0.2
96,999 + SM_b20088 0.22 +0.0
97,026 + SM_b20088 0.24 -0.5
97,187 + SM_b20088 0.32 +0.4

Or see this region's nucleotide sequence