Experiment: D-Mannitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20010 and SM_b20011 are separated by 226 nucleotides SM_b20011 and SM_b20012 are separated by 31 nucleotides
SM_b20010: SM_b20010 - hypothetical protein, at 14,375 to 15,442
_b20010
SM_b20011: SM_b20011 - hypothetical protein, at 15,669 to 16,448
_b20011
SM_b20012: SM_b20012 - hypothetical protein, at 16,480 to 19,023
_b20012
Position (kb) 15
16
17 Strain fitness (log2 ratio) -2
-1
0
1 at 14.676 kb on - strand, within SM_b20010 at 14.734 kb on + strand, within SM_b20010 at 14.735 kb on - strand, within SM_b20010 at 15.441 kb on - strand at 15.470 kb on + strand at 15.470 kb on + strand at 15.470 kb on + strand at 15.675 kb on - strand at 15.906 kb on + strand, within SM_b20011 at 15.907 kb on - strand, within SM_b20011 at 15.907 kb on - strand, within SM_b20011 at 15.908 kb on + strand, within SM_b20011 at 15.908 kb on + strand, within SM_b20011 at 15.909 kb on - strand, within SM_b20011 at 16.301 kb on + strand, within SM_b20011 at 16.508 kb on + strand at 16.957 kb on + strand, within SM_b20012 at 16.957 kb on + strand, within SM_b20012 at 16.958 kb on - strand, within SM_b20012 at 16.970 kb on + strand, within SM_b20012 at 17.004 kb on - strand, within SM_b20012 at 17.204 kb on + strand, within SM_b20012 at 17.205 kb on - strand, within SM_b20012 at 17.432 kb on + strand, within SM_b20012 at 17.433 kb on - strand, within SM_b20012 at 17.433 kb on - strand, within SM_b20012
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannitol (C) remove 14,676 - SM_b20010 0.28 -0.4 14,734 + SM_b20010 0.34 +0.3 14,735 - SM_b20010 0.34 +1.0 15,441 - -0.1 15,470 + +0.5 15,470 + -1.4 15,470 + +0.2 15,675 - -0.7 15,906 + SM_b20011 0.30 +0.8 15,907 - SM_b20011 0.31 +0.8 15,907 - SM_b20011 0.31 +1.2 15,908 + SM_b20011 0.31 +0.0 15,908 + SM_b20011 0.31 -0.1 15,909 - SM_b20011 0.31 +1.6 16,301 + SM_b20011 0.81 -0.0 16,508 + -2.0 16,957 + SM_b20012 0.19 -1.4 16,957 + SM_b20012 0.19 -0.1 16,958 - SM_b20012 0.19 -0.5 16,970 + SM_b20012 0.19 +0.1 17,004 - SM_b20012 0.21 -0.2 17,204 + SM_b20012 0.28 +0.5 17,205 - SM_b20012 0.28 -0.4 17,432 + SM_b20012 0.37 -0.9 17,433 - SM_b20012 0.37 +0.0 17,433 - SM_b20012 0.37 +0.1
Or see this region's nucleotide sequence