Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_5017

Experiment: KB with Emodin 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_5016 and Psyr_5017 are separated by 10 nucleotidesPsyr_5017 and Psyr_5018 overlap by 4 nucleotides Psyr_5016: Psyr_5016 - Alanine dehydrogenase/PNT, C-terminal:Alanine dehydrogenase/PNT, N-terminal, at 5,957,679 to 5,958,800 _5016 Psyr_5017: Psyr_5017 - NAD(P) transhydrogenase subunit alpha, at 5,958,811 to 5,959,134 _5017 Psyr_5018: Psyr_5018 - NAD(P) transhydrogenase, beta subunit, at 5,959,131 to 5,960,585 _5018 Position (kb) 5958 5959 5960Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5957.826 kb on + strand, within Psyr_5016at 5957.827 kb on - strand, within Psyr_5016at 5957.827 kb on - strand, within Psyr_5016at 5957.868 kb on + strand, within Psyr_5016at 5957.868 kb on + strand, within Psyr_5016at 5957.868 kb on + strand, within Psyr_5016at 5957.868 kb on + strand, within Psyr_5016at 5957.868 kb on + strand, within Psyr_5016at 5957.868 kb on + strand, within Psyr_5016at 5957.868 kb on + strand, within Psyr_5016at 5957.868 kb on + strand, within Psyr_5016at 5957.868 kb on + strand, within Psyr_5016at 5957.869 kb on - strand, within Psyr_5016at 5957.869 kb on - strand, within Psyr_5016at 5957.869 kb on - strand, within Psyr_5016at 5957.869 kb on - strand, within Psyr_5016at 5958.090 kb on + strand, within Psyr_5016at 5958.091 kb on - strand, within Psyr_5016at 5958.247 kb on + strand, within Psyr_5016at 5958.247 kb on + strand, within Psyr_5016at 5958.247 kb on + strand, within Psyr_5016at 5958.247 kb on + strand, within Psyr_5016at 5958.248 kb on - strand, within Psyr_5016at 5958.248 kb on - strand, within Psyr_5016at 5958.322 kb on - strand, within Psyr_5016at 5958.666 kb on + strand, within Psyr_5016at 5958.667 kb on - strand, within Psyr_5016at 5958.838 kb on + strandat 5958.839 kb on - strandat 5958.839 kb on - strandat 5958.839 kb on - strandat 5958.839 kb on - strandat 5958.868 kb on + strand, within Psyr_5017at 5958.868 kb on + strand, within Psyr_5017at 5958.868 kb on + strand, within Psyr_5017at 5958.868 kb on + strand, within Psyr_5017at 5958.868 kb on + strand, within Psyr_5017at 5958.868 kb on + strand, within Psyr_5017at 5958.869 kb on - strand, within Psyr_5017at 5958.869 kb on - strand, within Psyr_5017at 5958.869 kb on - strand, within Psyr_5017at 5958.869 kb on - strand, within Psyr_5017at 5958.877 kb on + strand, within Psyr_5017at 5959.149 kb on - strandat 5959.158 kb on + strandat 5959.158 kb on + strandat 5959.158 kb on + strandat 5959.158 kb on + strandat 5959.159 kb on - strandat 5959.159 kb on - strandat 5959.159 kb on - strandat 5959.338 kb on + strand, within Psyr_5018at 5959.338 kb on + strand, within Psyr_5018at 5959.339 kb on - strand, within Psyr_5018at 5959.339 kb on - strand, within Psyr_5018at 5959.339 kb on - strand, within Psyr_5018at 5959.469 kb on + strand, within Psyr_5018at 5959.469 kb on + strand, within Psyr_5018at 5959.472 kb on - strand, within Psyr_5018at 5959.472 kb on - strand, within Psyr_5018at 5959.472 kb on - strand, within Psyr_5018at 5959.472 kb on - strand, within Psyr_5018at 5959.472 kb on - strand, within Psyr_5018at 5959.472 kb on - strand, within Psyr_5018at 5959.580 kb on + strand, within Psyr_5018at 5959.580 kb on + strand, within Psyr_5018at 5959.580 kb on + strand, within Psyr_5018at 5959.851 kb on + strand, within Psyr_5018at 5959.851 kb on + strand, within Psyr_5018at 5959.852 kb on - strand, within Psyr_5018at 5959.852 kb on - strand, within Psyr_5018at 5959.924 kb on + strand, within Psyr_5018at 5959.924 kb on + strand, within Psyr_5018at 5959.950 kb on + strand, within Psyr_5018at 5959.950 kb on + strand, within Psyr_5018at 5959.950 kb on + strand, within Psyr_5018at 5959.950 kb on + strand, within Psyr_5018at 5959.950 kb on + strand, within Psyr_5018at 5959.950 kb on + strand, within Psyr_5018at 5959.950 kb on + strand, within Psyr_5018at 5959.950 kb on + strand, within Psyr_5018at 5959.950 kb on + strand, within Psyr_5018at 5959.950 kb on + strand, within Psyr_5018at 5959.950 kb on + strand, within Psyr_5018at 5959.950 kb on + strand, within Psyr_5018at 5959.950 kb on + strand, within Psyr_5018at 5959.950 kb on + strand, within Psyr_5018at 5959.950 kb on + strand, within Psyr_5018at 5959.951 kb on - strand, within Psyr_5018at 5959.951 kb on - strand, within Psyr_5018at 5959.951 kb on - strand, within Psyr_5018at 5959.951 kb on - strand, within Psyr_5018at 5959.951 kb on - strand, within Psyr_5018

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Emodin 10 mM
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5,957,826 + Psyr_5016 0.13 -1.0
5,957,827 - Psyr_5016 0.13 +1.0
5,957,827 - Psyr_5016 0.13 -0.2
5,957,868 + Psyr_5016 0.17 +1.1
5,957,868 + Psyr_5016 0.17 -1.3
5,957,868 + Psyr_5016 0.17 +0.6
5,957,868 + Psyr_5016 0.17 +0.4
5,957,868 + Psyr_5016 0.17 -2.2
5,957,868 + Psyr_5016 0.17 -1.1
5,957,868 + Psyr_5016 0.17 +0.3
5,957,868 + Psyr_5016 0.17 -2.1
5,957,868 + Psyr_5016 0.17 -0.6
5,957,869 - Psyr_5016 0.17 -1.1
5,957,869 - Psyr_5016 0.17 +0.1
5,957,869 - Psyr_5016 0.17 +1.4
5,957,869 - Psyr_5016 0.17 +0.8
5,958,090 + Psyr_5016 0.37 -0.4
5,958,091 - Psyr_5016 0.37 -0.3
5,958,247 + Psyr_5016 0.51 +0.9
5,958,247 + Psyr_5016 0.51 -0.8
5,958,247 + Psyr_5016 0.51 +1.5
5,958,247 + Psyr_5016 0.51 -1.3
5,958,248 - Psyr_5016 0.51 +0.1
5,958,248 - Psyr_5016 0.51 +3.4
5,958,322 - Psyr_5016 0.57 -0.0
5,958,666 + Psyr_5016 0.88 +2.0
5,958,667 - Psyr_5016 0.88 +3.4
5,958,838 + +0.6
5,958,839 - +2.4
5,958,839 - +0.4
5,958,839 - +0.1
5,958,839 - +1.0
5,958,868 + Psyr_5017 0.18 -0.9
5,958,868 + Psyr_5017 0.18 -0.7
5,958,868 + Psyr_5017 0.18 -1.0
5,958,868 + Psyr_5017 0.18 +1.0
5,958,868 + Psyr_5017 0.18 -0.3
5,958,868 + Psyr_5017 0.18 -0.4
5,958,869 - Psyr_5017 0.18 -1.0
5,958,869 - Psyr_5017 0.18 -0.6
5,958,869 - Psyr_5017 0.18 -1.2
5,958,869 - Psyr_5017 0.18 +1.4
5,958,877 + Psyr_5017 0.20 -0.8
5,959,149 - +0.7
5,959,158 + -0.4
5,959,158 + -0.6
5,959,158 + -0.1
5,959,158 + +0.0
5,959,159 - -0.2
5,959,159 - -0.7
5,959,159 - -0.8
5,959,338 + Psyr_5018 0.14 -1.0
5,959,338 + Psyr_5018 0.14 -0.5
5,959,339 - Psyr_5018 0.14 +1.4
5,959,339 - Psyr_5018 0.14 -0.0
5,959,339 - Psyr_5018 0.14 -1.0
5,959,469 + Psyr_5018 0.23 -0.2
5,959,469 + Psyr_5018 0.23 +0.8
5,959,472 - Psyr_5018 0.23 -0.5
5,959,472 - Psyr_5018 0.23 -1.2
5,959,472 - Psyr_5018 0.23 -0.7
5,959,472 - Psyr_5018 0.23 +1.6
5,959,472 - Psyr_5018 0.23 -1.7
5,959,472 - Psyr_5018 0.23 -1.9
5,959,580 + Psyr_5018 0.31 +0.3
5,959,580 + Psyr_5018 0.31 -0.3
5,959,580 + Psyr_5018 0.31 -0.2
5,959,851 + Psyr_5018 0.49 -1.6
5,959,851 + Psyr_5018 0.49 -0.1
5,959,852 - Psyr_5018 0.50 +1.5
5,959,852 - Psyr_5018 0.50 -0.7
5,959,924 + Psyr_5018 0.55 -0.4
5,959,924 + Psyr_5018 0.55 +1.5
5,959,950 + Psyr_5018 0.56 -0.6
5,959,950 + Psyr_5018 0.56 +1.2
5,959,950 + Psyr_5018 0.56 +1.3
5,959,950 + Psyr_5018 0.56 -2.1
5,959,950 + Psyr_5018 0.56 -1.1
5,959,950 + Psyr_5018 0.56 -0.1
5,959,950 + Psyr_5018 0.56 -0.9
5,959,950 + Psyr_5018 0.56 +0.3
5,959,950 + Psyr_5018 0.56 -0.3
5,959,950 + Psyr_5018 0.56 +0.4
5,959,950 + Psyr_5018 0.56 -1.0
5,959,950 + Psyr_5018 0.56 -1.3
5,959,950 + Psyr_5018 0.56 -0.4
5,959,950 + Psyr_5018 0.56 +0.1
5,959,950 + Psyr_5018 0.56 -0.1
5,959,951 - Psyr_5018 0.56 +0.1
5,959,951 - Psyr_5018 0.56 -0.8
5,959,951 - Psyr_5018 0.56 -1.7
5,959,951 - Psyr_5018 0.56 -0.3
5,959,951 - Psyr_5018 0.56 -0.7

Or see this region's nucleotide sequence