Experiment: KB with Emodin 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3731 and Psyr_3732 are separated by 279 nucleotides Psyr_3732 and Psyr_3733 are separated by 180 nucleotides
Psyr_3731: Psyr_3731 - conserved hypothetical protein, at 4,438,234 to 4,439,577
_3731
Psyr_3732: Psyr_3732 - hypothetical protein, at 4,439,857 to 4,440,036
_3732
Psyr_3733: Psyr_3733 - Outer membrane autotransporter barrel, at 4,440,217 to 4,443,333
_3733
Position (kb) 4439
4440
4441 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4438.952 kb on + strand, within Psyr_3731 at 4438.952 kb on + strand, within Psyr_3731 at 4438.952 kb on + strand, within Psyr_3731 at 4438.952 kb on + strand, within Psyr_3731 at 4438.952 kb on + strand, within Psyr_3731 at 4438.952 kb on + strand, within Psyr_3731 at 4438.952 kb on + strand, within Psyr_3731 at 4438.952 kb on + strand, within Psyr_3731 at 4438.953 kb on - strand, within Psyr_3731 at 4438.953 kb on - strand, within Psyr_3731 at 4438.953 kb on - strand, within Psyr_3731 at 4438.953 kb on - strand, within Psyr_3731 at 4438.953 kb on - strand, within Psyr_3731 at 4438.953 kb on - strand, within Psyr_3731 at 4438.953 kb on - strand, within Psyr_3731 at 4438.953 kb on - strand, within Psyr_3731 at 4439.108 kb on + strand, within Psyr_3731 at 4439.109 kb on - strand, within Psyr_3731 at 4439.109 kb on - strand, within Psyr_3731 at 4439.109 kb on - strand, within Psyr_3731 at 4439.109 kb on - strand, within Psyr_3731 at 4439.109 kb on - strand, within Psyr_3731 at 4439.109 kb on - strand, within Psyr_3731 at 4439.109 kb on - strand, within Psyr_3731 at 4439.111 kb on + strand, within Psyr_3731 at 4439.111 kb on + strand, within Psyr_3731 at 4439.111 kb on + strand, within Psyr_3731 at 4439.111 kb on + strand, within Psyr_3731 at 4439.326 kb on + strand, within Psyr_3731 at 4439.326 kb on + strand, within Psyr_3731 at 4439.326 kb on + strand, within Psyr_3731 at 4439.327 kb on - strand, within Psyr_3731 at 4439.327 kb on - strand, within Psyr_3731 at 4439.327 kb on - strand, within Psyr_3731 at 4439.352 kb on + strand, within Psyr_3731 at 4439.352 kb on + strand, within Psyr_3731 at 4439.352 kb on + strand, within Psyr_3731 at 4439.352 kb on + strand, within Psyr_3731 at 4439.352 kb on + strand, within Psyr_3731 at 4439.353 kb on - strand, within Psyr_3731 at 4439.353 kb on - strand, within Psyr_3731 at 4439.387 kb on - strand, within Psyr_3731 at 4439.539 kb on + strand at 4439.540 kb on - strand at 4439.603 kb on + strand at 4439.625 kb on - strand at 4439.797 kb on + strand at 4439.797 kb on + strand at 4439.797 kb on + strand at 4439.797 kb on + strand at 4439.797 kb on + strand at 4439.797 kb on + strand at 4439.797 kb on + strand at 4439.797 kb on + strand at 4439.797 kb on + strand at 4439.797 kb on + strand at 4439.797 kb on + strand at 4439.798 kb on - strand at 4439.798 kb on - strand at 4439.798 kb on - strand at 4439.798 kb on - strand at 4439.798 kb on - strand at 4439.798 kb on - strand at 4439.798 kb on - strand at 4439.798 kb on - strand at 4439.798 kb on - strand at 4439.798 kb on - strand at 4439.798 kb on - strand at 4439.798 kb on - strand at 4439.798 kb on - strand at 4439.798 kb on - strand at 4439.798 kb on - strand at 4439.799 kb on + strand at 4439.799 kb on + strand at 4439.800 kb on - strand at 4439.801 kb on + strand at 4439.801 kb on + strand at 4439.801 kb on + strand at 4439.801 kb on + strand at 4439.801 kb on + strand at 4439.801 kb on + strand at 4439.802 kb on - strand at 4439.802 kb on - strand at 4439.802 kb on - strand at 4439.802 kb on - strand at 4439.802 kb on - strand at 4439.802 kb on - strand at 4439.837 kb on - strand at 4439.837 kb on - strand at 4439.861 kb on + strand at 4440.169 kb on + strand at 4440.169 kb on + strand at 4440.170 kb on - strand at 4440.170 kb on - strand at 4440.170 kb on - strand at 4440.178 kb on - strand at 4440.178 kb on - strand at 4440.192 kb on + strand at 4440.192 kb on + strand at 4440.284 kb on + strand at 4440.285 kb on - strand at 4440.285 kb on - strand at 4440.373 kb on + strand at 4440.373 kb on + strand at 4440.373 kb on + strand at 4440.373 kb on + strand at 4440.374 kb on - strand at 4440.374 kb on - strand at 4440.374 kb on - strand at 4440.374 kb on - strand at 4440.374 kb on - strand at 4440.374 kb on - strand at 4440.374 kb on - strand at 4440.374 kb on - strand at 4440.374 kb on - strand at 4440.611 kb on + strand, within Psyr_3733 at 4440.611 kb on + strand, within Psyr_3733 at 4440.611 kb on + strand, within Psyr_3733 at 4440.612 kb on - strand, within Psyr_3733 at 4440.612 kb on - strand, within Psyr_3733 at 4440.821 kb on + strand, within Psyr_3733 at 4440.836 kb on + strand, within Psyr_3733 at 4440.836 kb on + strand, within Psyr_3733 at 4440.837 kb on - strand, within Psyr_3733
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Emodin 10 mM remove 4,438,952 + Psyr_3731 0.53 +3.0 4,438,952 + Psyr_3731 0.53 +1.2 4,438,952 + Psyr_3731 0.53 +1.6 4,438,952 + Psyr_3731 0.53 +1.3 4,438,952 + Psyr_3731 0.53 +1.0 4,438,952 + Psyr_3731 0.53 -1.0 4,438,952 + Psyr_3731 0.53 +0.4 4,438,952 + Psyr_3731 0.53 +1.0 4,438,953 - Psyr_3731 0.53 -0.8 4,438,953 - Psyr_3731 0.53 -0.8 4,438,953 - Psyr_3731 0.53 +2.9 4,438,953 - Psyr_3731 0.53 -0.0 4,438,953 - Psyr_3731 0.53 -0.0 4,438,953 - Psyr_3731 0.53 +0.4 4,438,953 - Psyr_3731 0.53 +0.4 4,438,953 - Psyr_3731 0.53 -1.4 4,439,108 + Psyr_3731 0.65 +0.1 4,439,109 - Psyr_3731 0.65 -0.0 4,439,109 - Psyr_3731 0.65 -1.4 4,439,109 - Psyr_3731 0.65 -0.3 4,439,109 - Psyr_3731 0.65 -0.1 4,439,109 - Psyr_3731 0.65 -0.4 4,439,109 - Psyr_3731 0.65 +0.0 4,439,109 - Psyr_3731 0.65 +0.3 4,439,111 + Psyr_3731 0.65 -0.6 4,439,111 + Psyr_3731 0.65 +0.2 4,439,111 + Psyr_3731 0.65 +1.0 4,439,111 + Psyr_3731 0.65 +1.7 4,439,326 + Psyr_3731 0.81 -0.9 4,439,326 + Psyr_3731 0.81 -1.6 4,439,326 + Psyr_3731 0.81 +1.3 4,439,327 - Psyr_3731 0.81 -0.8 4,439,327 - Psyr_3731 0.81 -0.8 4,439,327 - Psyr_3731 0.81 +0.1 4,439,352 + Psyr_3731 0.83 -0.3 4,439,352 + Psyr_3731 0.83 +0.1 4,439,352 + Psyr_3731 0.83 -0.7 4,439,352 + Psyr_3731 0.83 +0.4 4,439,352 + Psyr_3731 0.83 +2.0 4,439,353 - Psyr_3731 0.83 -0.3 4,439,353 - Psyr_3731 0.83 -0.4 4,439,387 - Psyr_3731 0.86 -1.0 4,439,539 + -0.5 4,439,540 - -1.0 4,439,603 + -0.9 4,439,625 - +1.3 4,439,797 + +0.1 4,439,797 + -1.6 4,439,797 + +1.0 4,439,797 + +0.1 4,439,797 + +0.6 4,439,797 + +0.2 4,439,797 + -0.7 4,439,797 + +2.0 4,439,797 + -0.1 4,439,797 + -0.7 4,439,797 + +0.3 4,439,798 - -0.1 4,439,798 - -1.4 4,439,798 - +0.4 4,439,798 - +0.3 4,439,798 - -0.8 4,439,798 - +0.2 4,439,798 - +1.2 4,439,798 - +0.1 4,439,798 - +1.3 4,439,798 - -3.6 4,439,798 - -1.6 4,439,798 - -0.8 4,439,798 - +3.0 4,439,798 - -0.5 4,439,798 - -0.3 4,439,799 + -0.8 4,439,799 + -0.4 4,439,800 - +2.4 4,439,801 + +0.2 4,439,801 + +1.5 4,439,801 + +0.3 4,439,801 + -1.5 4,439,801 + -1.4 4,439,801 + -0.0 4,439,802 - -0.2 4,439,802 - -0.6 4,439,802 - -1.5 4,439,802 - -2.7 4,439,802 - -0.2 4,439,802 - -1.6 4,439,837 - -0.2 4,439,837 - -0.9 4,439,861 + -0.3 4,440,169 + -0.6 4,440,169 + -2.0 4,440,170 - -0.3 4,440,170 - +0.8 4,440,170 - -0.1 4,440,178 - -0.1 4,440,178 - +0.4 4,440,192 + +0.3 4,440,192 + -0.5 4,440,284 + +1.4 4,440,285 - +0.4 4,440,285 - -0.1 4,440,373 + +2.4 4,440,373 + +0.8 4,440,373 + +4.3 4,440,373 + -0.5 4,440,374 - -1.7 4,440,374 - -0.3 4,440,374 - +1.4 4,440,374 - -0.1 4,440,374 - -0.3 4,440,374 - -1.7 4,440,374 - -0.9 4,440,374 - -0.1 4,440,374 - +0.7 4,440,611 + Psyr_3733 0.13 +0.7 4,440,611 + Psyr_3733 0.13 -0.6 4,440,611 + Psyr_3733 0.13 +1.0 4,440,612 - Psyr_3733 0.13 -0.1 4,440,612 - Psyr_3733 0.13 -1.1 4,440,821 + Psyr_3733 0.19 +1.0 4,440,836 + Psyr_3733 0.20 +0.7 4,440,836 + Psyr_3733 0.20 -1.4 4,440,837 - Psyr_3733 0.20 +1.7
Or see this region's nucleotide sequence