Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3715

Experiment: KB with Emodin 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3713 and Psyr_3714 are separated by 0 nucleotidesPsyr_3714 and Psyr_3715 overlap by 43 nucleotidesPsyr_3715 and Psyr_3716 are separated by 4 nucleotides Psyr_3713: Psyr_3713 - 4'-phosphopantetheinyl transferase, at 4,399,936 to 4,400,670 _3713 Psyr_3714: Psyr_3714 - Ferric iron reductase, at 4,400,671 to 4,401,417 _3714 Psyr_3715: Psyr_3715 - ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal, at 4,401,375 to 4,402,985 _3715 Psyr_3716: Psyr_3716 - Response regulator receiver:Transcriptional regulatory protein, C-terminal, at 4,402,990 to 4,403,733 _3716 Position (kb) 4401 4402 4403Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 4400.780 kb on + strand, within Psyr_3714at 4400.780 kb on + strand, within Psyr_3714at 4400.780 kb on + strand, within Psyr_3714at 4400.780 kb on + strand, within Psyr_3714at 4400.781 kb on - strand, within Psyr_3714at 4400.781 kb on - strand, within Psyr_3714at 4400.781 kb on - strand, within Psyr_3714at 4400.781 kb on - strand, within Psyr_3714at 4400.781 kb on - strand, within Psyr_3714at 4400.906 kb on + strand, within Psyr_3714at 4400.907 kb on - strand, within Psyr_3714at 4400.967 kb on + strand, within Psyr_3714at 4400.967 kb on + strand, within Psyr_3714at 4400.967 kb on + strand, within Psyr_3714at 4400.967 kb on + strand, within Psyr_3714at 4400.967 kb on + strand, within Psyr_3714at 4400.967 kb on + strand, within Psyr_3714at 4400.967 kb on + strand, within Psyr_3714at 4400.968 kb on - strand, within Psyr_3714at 4400.968 kb on - strand, within Psyr_3714at 4400.968 kb on - strand, within Psyr_3714at 4400.968 kb on - strand, within Psyr_3714at 4401.030 kb on + strand, within Psyr_3714at 4401.182 kb on + strand, within Psyr_3714at 4401.257 kb on - strand, within Psyr_3714at 4401.257 kb on - strand, within Psyr_3714at 4401.645 kb on - strand, within Psyr_3715at 4401.710 kb on - strand, within Psyr_3715at 4401.887 kb on - strand, within Psyr_3715at 4401.949 kb on + strand, within Psyr_3715at 4401.949 kb on + strand, within Psyr_3715at 4401.950 kb on - strand, within Psyr_3715at 4401.950 kb on - strand, within Psyr_3715at 4401.950 kb on - strand, within Psyr_3715at 4401.950 kb on - strand, within Psyr_3715at 4402.234 kb on + strand, within Psyr_3715at 4402.234 kb on + strand, within Psyr_3715at 4402.234 kb on + strand, within Psyr_3715at 4402.234 kb on + strand, within Psyr_3715at 4402.234 kb on + strand, within Psyr_3715at 4402.234 kb on + strand, within Psyr_3715at 4402.234 kb on + strand, within Psyr_3715at 4402.234 kb on + strand, within Psyr_3715at 4402.234 kb on + strand, within Psyr_3715at 4402.234 kb on + strand, within Psyr_3715at 4402.235 kb on - strand, within Psyr_3715at 4402.235 kb on - strand, within Psyr_3715at 4402.235 kb on - strand, within Psyr_3715at 4402.235 kb on - strand, within Psyr_3715at 4402.298 kb on - strand, within Psyr_3715at 4402.312 kb on + strand, within Psyr_3715at 4402.564 kb on + strandat 4402.564 kb on + strand, within Psyr_3715at 4402.564 kb on + strand, within Psyr_3715at 4402.565 kb on - strand, within Psyr_3715at 4402.565 kb on - strand, within Psyr_3715at 4402.565 kb on - strand, within Psyr_3715at 4402.568 kb on + strand, within Psyr_3715at 4402.569 kb on - strand, within Psyr_3715at 4402.648 kb on + strand, within Psyr_3715at 4402.687 kb on - strand, within Psyr_3715at 4402.844 kb on + strandat 4402.845 kb on - strandat 4402.941 kb on + strandat 4402.950 kb on + strandat 4402.960 kb on + strandat 4402.960 kb on + strandat 4402.960 kb on + strandat 4402.960 kb on + strandat 4402.960 kb on + strandat 4402.961 kb on - strandat 4402.961 kb on - strandat 4402.961 kb on - strandat 4403.121 kb on + strand, within Psyr_3716at 4403.122 kb on - strand, within Psyr_3716at 4403.122 kb on - strand, within Psyr_3716at 4403.383 kb on - strand, within Psyr_3716at 4403.452 kb on + strand, within Psyr_3716at 4403.452 kb on + strand, within Psyr_3716at 4403.452 kb on + strand, within Psyr_3716at 4403.452 kb on + strand, within Psyr_3716at 4403.452 kb on + strand, within Psyr_3716at 4403.452 kb on + strand, within Psyr_3716at 4403.452 kb on + strand, within Psyr_3716at 4403.452 kb on + strand, within Psyr_3716at 4403.452 kb on + strand, within Psyr_3716at 4403.452 kb on + strand, within Psyr_3716at 4403.452 kb on + strand, within Psyr_3716at 4403.452 kb on + strand, within Psyr_3716at 4403.452 kb on + strand, within Psyr_3716at 4403.452 kb on + strand, within Psyr_3716at 4403.452 kb on + strand, within Psyr_3716at 4403.453 kb on - strand, within Psyr_3716at 4403.453 kb on - strand, within Psyr_3716at 4403.453 kb on - strand, within Psyr_3716at 4403.453 kb on - strand, within Psyr_3716at 4403.453 kb on - strand, within Psyr_3716at 4403.453 kb on - strand, within Psyr_3716at 4403.453 kb on - strand, within Psyr_3716at 4403.453 kb on - strand, within Psyr_3716at 4403.453 kb on - strand, within Psyr_3716at 4403.453 kb on - strand, within Psyr_3716at 4403.453 kb on - strand, within Psyr_3716at 4403.453 kb on - strand, within Psyr_3716at 4403.453 kb on - strand, within Psyr_3716at 4403.453 kb on - strand, within Psyr_3716at 4403.453 kb on - strand, within Psyr_3716at 4403.453 kb on - strand, within Psyr_3716at 4403.454 kb on + strand, within Psyr_3716at 4403.455 kb on - strand, within Psyr_3716at 4403.455 kb on - strand, within Psyr_3716at 4403.704 kb on + strandat 4403.704 kb on + strandat 4403.704 kb on + strandat 4403.704 kb on + strandat 4403.704 kb on + strandat 4403.705 kb on - strandat 4403.705 kb on - strandat 4403.705 kb on - strandat 4403.705 kb on - strandat 4403.705 kb on - strandat 4403.705 kb on - strandat 4403.705 kb on - strandat 4403.705 kb on - strandat 4403.705 kb on - strandat 4403.806 kb on + strandat 4403.806 kb on + strandat 4403.806 kb on + strandat 4403.806 kb on + strandat 4403.806 kb on + strandat 4403.846 kb on + strandat 4403.846 kb on + strandat 4403.847 kb on - strandat 4403.969 kb on + strandat 4403.970 kb on - strandat 4403.970 kb on - strandat 4403.970 kb on - strandat 4403.973 kb on + strandat 4403.974 kb on - strandat 4403.974 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Emodin 10 mM
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4,400,780 + Psyr_3714 0.15 +1.2
4,400,780 + Psyr_3714 0.15 +0.5
4,400,780 + Psyr_3714 0.15 -0.1
4,400,780 + Psyr_3714 0.15 -0.0
4,400,781 - Psyr_3714 0.15 +0.6
4,400,781 - Psyr_3714 0.15 +0.4
4,400,781 - Psyr_3714 0.15 +0.5
4,400,781 - Psyr_3714 0.15 +0.6
4,400,781 - Psyr_3714 0.15 -0.0
4,400,906 + Psyr_3714 0.31 +0.5
4,400,907 - Psyr_3714 0.32 +0.3
4,400,967 + Psyr_3714 0.40 -0.0
4,400,967 + Psyr_3714 0.40 -0.2
4,400,967 + Psyr_3714 0.40 +2.5
4,400,967 + Psyr_3714 0.40 -0.4
4,400,967 + Psyr_3714 0.40 +2.8
4,400,967 + Psyr_3714 0.40 +1.0
4,400,967 + Psyr_3714 0.40 -0.7
4,400,968 - Psyr_3714 0.40 -0.3
4,400,968 - Psyr_3714 0.40 +0.3
4,400,968 - Psyr_3714 0.40 +0.4
4,400,968 - Psyr_3714 0.40 -0.3
4,401,030 + Psyr_3714 0.48 -0.8
4,401,182 + Psyr_3714 0.68 +0.5
4,401,257 - Psyr_3714 0.78 -1.0
4,401,257 - Psyr_3714 0.78 -1.5
4,401,645 - Psyr_3715 0.17 -0.3
4,401,710 - Psyr_3715 0.21 +2.4
4,401,887 - Psyr_3715 0.32 +0.8
4,401,949 + Psyr_3715 0.36 -0.2
4,401,949 + Psyr_3715 0.36 +0.2
4,401,950 - Psyr_3715 0.36 -0.0
4,401,950 - Psyr_3715 0.36 -0.3
4,401,950 - Psyr_3715 0.36 -0.9
4,401,950 - Psyr_3715 0.36 +1.1
4,402,234 + Psyr_3715 0.53 +1.6
4,402,234 + Psyr_3715 0.53 -0.2
4,402,234 + Psyr_3715 0.53 +1.7
4,402,234 + Psyr_3715 0.53 +1.0
4,402,234 + Psyr_3715 0.53 -0.6
4,402,234 + Psyr_3715 0.53 -0.5
4,402,234 + Psyr_3715 0.53 -0.2
4,402,234 + Psyr_3715 0.53 +0.5
4,402,234 + Psyr_3715 0.53 +0.4
4,402,234 + Psyr_3715 0.53 +1.6
4,402,235 - Psyr_3715 0.53 -0.3
4,402,235 - Psyr_3715 0.53 +1.4
4,402,235 - Psyr_3715 0.53 -0.5
4,402,235 - Psyr_3715 0.53 +1.5
4,402,298 - Psyr_3715 0.57 +0.4
4,402,312 + Psyr_3715 0.58 +1.4
4,402,564 + -1.4
4,402,564 + Psyr_3715 0.74 -1.5
4,402,564 + Psyr_3715 0.74 +1.2
4,402,565 - Psyr_3715 0.74 -0.5
4,402,565 - Psyr_3715 0.74 -0.7
4,402,565 - Psyr_3715 0.74 -0.9
4,402,568 + Psyr_3715 0.74 -0.1
4,402,569 - Psyr_3715 0.74 -0.4
4,402,648 + Psyr_3715 0.79 -2.2
4,402,687 - Psyr_3715 0.81 +1.0
4,402,844 + +0.2
4,402,845 - -1.0
4,402,941 + -1.6
4,402,950 + +0.2
4,402,960 + +0.1
4,402,960 + -0.6
4,402,960 + -0.6
4,402,960 + +0.0
4,402,960 + -0.5
4,402,961 - -1.8
4,402,961 - +4.8
4,402,961 - -3.0
4,403,121 + Psyr_3716 0.18 +0.0
4,403,122 - Psyr_3716 0.18 -1.2
4,403,122 - Psyr_3716 0.18 +0.5
4,403,383 - Psyr_3716 0.53 -1.4
4,403,452 + Psyr_3716 0.62 +1.5
4,403,452 + Psyr_3716 0.62 -0.2
4,403,452 + Psyr_3716 0.62 -0.8
4,403,452 + Psyr_3716 0.62 +0.7
4,403,452 + Psyr_3716 0.62 +0.7
4,403,452 + Psyr_3716 0.62 -0.4
4,403,452 + Psyr_3716 0.62 +0.5
4,403,452 + Psyr_3716 0.62 +1.1
4,403,452 + Psyr_3716 0.62 +0.9
4,403,452 + Psyr_3716 0.62 -0.2
4,403,452 + Psyr_3716 0.62 -1.5
4,403,452 + Psyr_3716 0.62 -1.2
4,403,452 + Psyr_3716 0.62 +0.2
4,403,452 + Psyr_3716 0.62 -0.1
4,403,452 + Psyr_3716 0.62 +0.1
4,403,453 - Psyr_3716 0.62 -0.1
4,403,453 - Psyr_3716 0.62 -1.7
4,403,453 - Psyr_3716 0.62 -0.1
4,403,453 - Psyr_3716 0.62 +1.2
4,403,453 - Psyr_3716 0.62 -0.7
4,403,453 - Psyr_3716 0.62 +0.8
4,403,453 - Psyr_3716 0.62 -0.5
4,403,453 - Psyr_3716 0.62 -0.2
4,403,453 - Psyr_3716 0.62 +3.8
4,403,453 - Psyr_3716 0.62 -0.0
4,403,453 - Psyr_3716 0.62 -1.2
4,403,453 - Psyr_3716 0.62 +1.0
4,403,453 - Psyr_3716 0.62 +0.0
4,403,453 - Psyr_3716 0.62 -0.4
4,403,453 - Psyr_3716 0.62 -0.2
4,403,453 - Psyr_3716 0.62 +1.4
4,403,454 + Psyr_3716 0.62 -0.1
4,403,455 - Psyr_3716 0.62 +0.7
4,403,455 - Psyr_3716 0.62 -2.0
4,403,704 + +2.0
4,403,704 + +2.0
4,403,704 + +0.2
4,403,704 + -0.7
4,403,704 + -0.4
4,403,705 - +0.8
4,403,705 - +0.3
4,403,705 - +1.4
4,403,705 - -1.4
4,403,705 - -1.2
4,403,705 - -0.8
4,403,705 - -0.2
4,403,705 - +1.5
4,403,705 - -1.1
4,403,806 + +0.2
4,403,806 + +0.5
4,403,806 + +0.4
4,403,806 + -0.3
4,403,806 + +0.4
4,403,846 + -1.2
4,403,846 + -1.4
4,403,847 - -0.5
4,403,969 + -0.0
4,403,970 - -0.6
4,403,970 - -1.1
4,403,970 - -3.0
4,403,973 + +0.0
4,403,974 - -1.5
4,403,974 - -1.1

Or see this region's nucleotide sequence