Experiment: KB with Emodin 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3623 and Psyr_3624 are separated by 58 nucleotides Psyr_3624 and Psyr_3625 overlap by 11 nucleotides Psyr_3625 and Psyr_3626 are separated by 204 nucleotides Psyr_3626 and Psyr_3627 are separated by 190 nucleotides
Psyr_3623: Psyr_3623 - Protein of unknown function DUF1127, at 4,307,472 to 4,307,705
_3623
Psyr_3624: Psyr_3624 - transcriptional regulator, LysR family, at 4,307,764 to 4,308,654
_3624
Psyr_3625: Psyr_3625 - Protein of unknown function DUF81, at 4,308,644 to 4,309,375
_3625
Psyr_3626: Psyr_3626 - transcriptional regulator, MarR family, at 4,309,580 to 4,310,053
_3626
Psyr_3627: Psyr_3627 - OsmC-like protein, at 4,310,244 to 4,310,663
_3627
Position (kb) 4308
4309
4310 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 4307.674 kb on - strand, within Psyr_3623 at 4307.748 kb on - strand at 4307.798 kb on + strand at 4307.809 kb on + strand at 4308.008 kb on + strand, within Psyr_3624 at 4308.009 kb on - strand, within Psyr_3624 at 4308.115 kb on + strand, within Psyr_3624 at 4308.115 kb on + strand, within Psyr_3624 at 4308.115 kb on + strand, within Psyr_3624 at 4308.116 kb on - strand, within Psyr_3624 at 4308.116 kb on - strand, within Psyr_3624 at 4308.116 kb on - strand, within Psyr_3624 at 4308.431 kb on - strand, within Psyr_3624 at 4308.628 kb on + strand at 4308.816 kb on + strand, within Psyr_3625 at 4308.816 kb on + strand, within Psyr_3625 at 4308.816 kb on + strand, within Psyr_3625 at 4308.816 kb on + strand, within Psyr_3625 at 4308.816 kb on + strand, within Psyr_3625 at 4308.817 kb on - strand, within Psyr_3625 at 4308.817 kb on - strand, within Psyr_3625 at 4309.032 kb on + strand, within Psyr_3625 at 4309.032 kb on + strand, within Psyr_3625 at 4309.032 kb on + strand, within Psyr_3625 at 4309.032 kb on + strand, within Psyr_3625 at 4309.033 kb on - strand, within Psyr_3625 at 4309.033 kb on - strand, within Psyr_3625 at 4309.033 kb on - strand, within Psyr_3625 at 4309.033 kb on - strand, within Psyr_3625 at 4309.174 kb on + strand, within Psyr_3625 at 4309.203 kb on + strand, within Psyr_3625 at 4309.423 kb on + strand at 4309.517 kb on - strand at 4309.517 kb on - strand at 4309.543 kb on + strand at 4309.543 kb on + strand at 4309.543 kb on + strand at 4309.544 kb on - strand at 4309.544 kb on - strand at 4309.544 kb on - strand at 4309.548 kb on + strand at 4309.549 kb on - strand at 4309.579 kb on + strand at 4309.580 kb on - strand at 4309.664 kb on + strand, within Psyr_3626 at 4309.665 kb on - strand, within Psyr_3626 at 4309.665 kb on - strand, within Psyr_3626 at 4309.694 kb on + strand, within Psyr_3626 at 4309.695 kb on - strand, within Psyr_3626 at 4309.695 kb on - strand, within Psyr_3626 at 4309.727 kb on + strand, within Psyr_3626 at 4309.728 kb on - strand, within Psyr_3626 at 4309.736 kb on + strand, within Psyr_3626 at 4309.950 kb on + strand, within Psyr_3626 at 4310.172 kb on + strand at 4310.256 kb on + strand at 4310.256 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Emodin 10 mM remove 4,307,674 - Psyr_3623 0.86 +0.2 4,307,748 - -0.7 4,307,798 + +0.2 4,307,809 + -0.3 4,308,008 + Psyr_3624 0.27 +0.7 4,308,009 - Psyr_3624 0.27 +0.9 4,308,115 + Psyr_3624 0.39 -0.7 4,308,115 + Psyr_3624 0.39 +1.2 4,308,115 + Psyr_3624 0.39 -0.1 4,308,116 - Psyr_3624 0.40 +0.0 4,308,116 - Psyr_3624 0.40 +0.3 4,308,116 - Psyr_3624 0.40 +1.1 4,308,431 - Psyr_3624 0.75 -1.1 4,308,628 + -1.3 4,308,816 + Psyr_3625 0.23 -0.9 4,308,816 + Psyr_3625 0.23 +0.3 4,308,816 + Psyr_3625 0.23 +1.4 4,308,816 + Psyr_3625 0.23 +3.7 4,308,816 + Psyr_3625 0.23 +0.8 4,308,817 - Psyr_3625 0.24 -0.0 4,308,817 - Psyr_3625 0.24 -0.9 4,309,032 + Psyr_3625 0.53 +0.9 4,309,032 + Psyr_3625 0.53 -0.8 4,309,032 + Psyr_3625 0.53 +0.4 4,309,032 + Psyr_3625 0.53 -0.7 4,309,033 - Psyr_3625 0.53 +0.9 4,309,033 - Psyr_3625 0.53 +0.7 4,309,033 - Psyr_3625 0.53 +4.4 4,309,033 - Psyr_3625 0.53 +0.2 4,309,174 + Psyr_3625 0.72 +1.7 4,309,203 + Psyr_3625 0.76 +3.3 4,309,423 + -1.9 4,309,517 - -0.7 4,309,517 - -0.8 4,309,543 + +0.3 4,309,543 + +0.2 4,309,543 + -1.5 4,309,544 - +0.2 4,309,544 - -0.9 4,309,544 - -0.1 4,309,548 + +0.8 4,309,549 - -1.7 4,309,579 + +0.0 4,309,580 - -0.1 4,309,664 + Psyr_3626 0.18 +0.3 4,309,665 - Psyr_3626 0.18 -1.4 4,309,665 - Psyr_3626 0.18 -1.4 4,309,694 + Psyr_3626 0.24 -0.1 4,309,695 - Psyr_3626 0.24 -0.7 4,309,695 - Psyr_3626 0.24 -0.9 4,309,727 + Psyr_3626 0.31 -1.5 4,309,728 - Psyr_3626 0.31 -0.2 4,309,736 + Psyr_3626 0.33 +1.2 4,309,950 + Psyr_3626 0.78 -1.5 4,310,172 + -1.1 4,310,256 + -0.4 4,310,256 + +0.2
Or see this region's nucleotide sequence