Experiment: KB with Emodin 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3369 and Psyr_3370 overlap by 4 nucleotides Psyr_3370 and Psyr_3371 are separated by 565 nucleotides
Psyr_3369: Psyr_3369 - Twin-arginine translocation pathway signal:Tat-translocated enzyme:Dyp-type peroxidase, at 4,027,962 to 4,029,284
_3369
Psyr_3370: Psyr_3370 - Protein of unknown function DUF451, at 4,029,281 to 4,030,138
_3370
Psyr_3371: Psyr_3371 - Oxidoreductase, molybdopterin binding protein, at 4,030,704 to 4,031,474
_3371
Position (kb) 4029
4030
4031 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4028.796 kb on + strand, within Psyr_3369 at 4028.797 kb on - strand, within Psyr_3369 at 4028.934 kb on + strand, within Psyr_3369 at 4028.934 kb on + strand, within Psyr_3369 at 4029.046 kb on - strand, within Psyr_3369 at 4029.046 kb on - strand, within Psyr_3369 at 4029.046 kb on - strand, within Psyr_3369 at 4029.171 kb on + strand at 4029.171 kb on + strand at 4029.172 kb on - strand at 4029.195 kb on + strand at 4029.288 kb on - strand at 4029.288 kb on - strand at 4029.288 kb on - strand at 4029.431 kb on + strand, within Psyr_3370 at 4029.431 kb on + strand, within Psyr_3370 at 4029.431 kb on + strand, within Psyr_3370 at 4029.431 kb on + strand, within Psyr_3370 at 4029.431 kb on + strand, within Psyr_3370 at 4029.432 kb on - strand, within Psyr_3370 at 4029.432 kb on - strand, within Psyr_3370 at 4029.525 kb on - strand, within Psyr_3370 at 4029.542 kb on + strand, within Psyr_3370 at 4029.546 kb on - strand, within Psyr_3370 at 4029.546 kb on - strand, within Psyr_3370 at 4029.669 kb on - strand, within Psyr_3370 at 4029.872 kb on + strand, within Psyr_3370 at 4029.873 kb on - strand, within Psyr_3370 at 4030.007 kb on + strand, within Psyr_3370 at 4030.007 kb on + strand, within Psyr_3370 at 4030.007 kb on + strand, within Psyr_3370 at 4030.008 kb on - strand, within Psyr_3370 at 4030.008 kb on - strand, within Psyr_3370 at 4030.008 kb on - strand, within Psyr_3370 at 4030.008 kb on - strand, within Psyr_3370 at 4030.008 kb on - strand, within Psyr_3370 at 4030.008 kb on - strand, within Psyr_3370 at 4030.008 kb on - strand, within Psyr_3370 at 4030.191 kb on - strand at 4030.254 kb on + strand at 4030.273 kb on + strand at 4030.282 kb on - strand at 4030.510 kb on - strand at 4030.705 kb on + strand at 4030.706 kb on - strand at 4030.726 kb on + strand at 4030.727 kb on - strand at 4030.727 kb on - strand at 4030.727 kb on - strand at 4030.764 kb on - strand at 4030.907 kb on + strand, within Psyr_3371 at 4030.927 kb on + strand, within Psyr_3371 at 4030.928 kb on - strand, within Psyr_3371 at 4030.928 kb on - strand, within Psyr_3371 at 4030.984 kb on + strand, within Psyr_3371 at 4030.984 kb on + strand, within Psyr_3371 at 4030.984 kb on + strand, within Psyr_3371 at 4030.984 kb on + strand, within Psyr_3371 at 4030.985 kb on - strand, within Psyr_3371
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Emodin 10 mM remove 4,028,796 + Psyr_3369 0.63 -0.3 4,028,797 - Psyr_3369 0.63 -0.9 4,028,934 + Psyr_3369 0.73 +0.2 4,028,934 + Psyr_3369 0.73 -0.0 4,029,046 - Psyr_3369 0.82 +0.9 4,029,046 - Psyr_3369 0.82 -0.6 4,029,046 - Psyr_3369 0.82 +0.5 4,029,171 + -0.8 4,029,171 + +1.4 4,029,172 - -0.1 4,029,195 + -0.1 4,029,288 - +2.3 4,029,288 - +0.0 4,029,288 - -0.4 4,029,431 + Psyr_3370 0.17 -0.1 4,029,431 + Psyr_3370 0.17 +0.3 4,029,431 + Psyr_3370 0.17 -0.2 4,029,431 + Psyr_3370 0.17 -0.7 4,029,431 + Psyr_3370 0.17 -1.1 4,029,432 - Psyr_3370 0.18 +0.7 4,029,432 - Psyr_3370 0.18 -0.0 4,029,525 - Psyr_3370 0.28 -0.7 4,029,542 + Psyr_3370 0.30 -2.0 4,029,546 - Psyr_3370 0.31 -0.5 4,029,546 - Psyr_3370 0.31 -0.2 4,029,669 - Psyr_3370 0.45 -0.7 4,029,872 + Psyr_3370 0.69 -1.3 4,029,873 - Psyr_3370 0.69 -1.4 4,030,007 + Psyr_3370 0.85 -0.8 4,030,007 + Psyr_3370 0.85 +0.1 4,030,007 + Psyr_3370 0.85 +1.4 4,030,008 - Psyr_3370 0.85 -0.8 4,030,008 - Psyr_3370 0.85 +0.1 4,030,008 - Psyr_3370 0.85 -1.3 4,030,008 - Psyr_3370 0.85 -0.4 4,030,008 - Psyr_3370 0.85 -0.5 4,030,008 - Psyr_3370 0.85 -1.1 4,030,008 - Psyr_3370 0.85 +0.2 4,030,191 - +0.1 4,030,254 + +0.7 4,030,273 + -0.5 4,030,282 - +2.3 4,030,510 - +1.1 4,030,705 + +0.6 4,030,706 - +0.5 4,030,726 + +0.5 4,030,727 - +2.6 4,030,727 - -0.5 4,030,727 - +0.6 4,030,764 - +0.6 4,030,907 + Psyr_3371 0.26 -0.3 4,030,927 + Psyr_3371 0.29 -0.3 4,030,928 - Psyr_3371 0.29 -2.4 4,030,928 - Psyr_3371 0.29 +0.0 4,030,984 + Psyr_3371 0.36 +1.5 4,030,984 + Psyr_3371 0.36 -0.2 4,030,984 + Psyr_3371 0.36 +0.7 4,030,984 + Psyr_3371 0.36 +2.3 4,030,985 - Psyr_3371 0.36 -0.8
Or see this region's nucleotide sequence