Experiment: KB with Emodin 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1216 and Psyr_1217 are separated by 166 nucleotides Psyr_1217 and Psyr_1218 are separated by 64 nucleotides
Psyr_1216: Psyr_1216 - type III secretion outer membrane protein PopN, at 1,373,498 to 1,374,679
_1216
Psyr_1217: Psyr_1217 - Sigma-70 region 2:Sigma-70 region 4, at 1,374,846 to 1,375,400
_1217
Psyr_1218: Psyr_1218 - type III helper protein HrpK1, at 1,375,465 to 1,377,777
_1218
Position (kb) 1374
1375
1376 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 1374.040 kb on - strand, within Psyr_1216 at 1374.051 kb on - strand, within Psyr_1216 at 1374.151 kb on + strand, within Psyr_1216 at 1374.152 kb on - strand, within Psyr_1216 at 1374.152 kb on - strand, within Psyr_1216 at 1374.170 kb on + strand, within Psyr_1216 at 1374.171 kb on - strand, within Psyr_1216 at 1374.171 kb on - strand, within Psyr_1216 at 1374.174 kb on + strand, within Psyr_1216 at 1374.174 kb on + strand, within Psyr_1216 at 1374.174 kb on + strand, within Psyr_1216 at 1374.174 kb on + strand, within Psyr_1216 at 1374.174 kb on + strand, within Psyr_1216 at 1374.174 kb on + strand, within Psyr_1216 at 1374.174 kb on + strand, within Psyr_1216 at 1374.174 kb on + strand, within Psyr_1216 at 1374.175 kb on - strand, within Psyr_1216 at 1374.175 kb on - strand, within Psyr_1216 at 1374.175 kb on - strand, within Psyr_1216 at 1374.175 kb on - strand, within Psyr_1216 at 1374.175 kb on - strand, within Psyr_1216 at 1374.175 kb on - strand, within Psyr_1216 at 1374.175 kb on - strand, within Psyr_1216 at 1374.208 kb on + strand, within Psyr_1216 at 1374.208 kb on + strand, within Psyr_1216 at 1374.209 kb on - strand, within Psyr_1216 at 1374.209 kb on - strand, within Psyr_1216 at 1374.209 kb on - strand, within Psyr_1216 at 1374.366 kb on + strand, within Psyr_1216 at 1374.367 kb on - strand, within Psyr_1216 at 1374.583 kb on + strand at 1374.583 kb on + strand at 1374.584 kb on - strand at 1374.584 kb on - strand at 1374.584 kb on - strand at 1374.605 kb on - strand at 1374.706 kb on - strand at 1374.814 kb on - strand at 1375.070 kb on - strand, within Psyr_1217 at 1375.070 kb on - strand, within Psyr_1217 at 1375.195 kb on + strand, within Psyr_1217 at 1375.195 kb on + strand, within Psyr_1217 at 1375.195 kb on + strand, within Psyr_1217 at 1375.196 kb on - strand, within Psyr_1217 at 1375.196 kb on - strand, within Psyr_1217 at 1375.196 kb on - strand, within Psyr_1217 at 1375.226 kb on - strand, within Psyr_1217 at 1375.384 kb on + strand at 1375.384 kb on + strand at 1375.384 kb on + strand at 1375.384 kb on + strand at 1375.384 kb on + strand at 1375.384 kb on + strand at 1375.384 kb on + strand at 1375.384 kb on + strand at 1375.385 kb on - strand at 1375.385 kb on - strand at 1375.385 kb on - strand at 1375.385 kb on - strand at 1375.385 kb on - strand at 1375.385 kb on - strand at 1375.385 kb on - strand at 1375.385 kb on - strand at 1375.385 kb on - strand at 1375.385 kb on - strand at 1375.385 kb on - strand at 1375.385 kb on - strand at 1375.385 kb on - strand at 1375.410 kb on + strand at 1375.410 kb on + strand at 1375.410 kb on + strand at 1375.410 kb on + strand at 1375.410 kb on + strand at 1375.410 kb on + strand at 1375.411 kb on - strand at 1375.411 kb on - strand at 1375.411 kb on - strand at 1375.411 kb on - strand at 1375.431 kb on + strand at 1375.431 kb on + strand at 1375.479 kb on + strand at 1375.479 kb on + strand at 1375.479 kb on + strand at 1375.479 kb on + strand at 1375.479 kb on + strand at 1375.479 kb on + strand at 1375.479 kb on + strand at 1375.479 kb on + strand at 1375.479 kb on + strand at 1375.479 kb on + strand at 1375.479 kb on + strand at 1375.479 kb on + strand at 1375.479 kb on + strand at 1375.479 kb on + strand at 1375.479 kb on + strand at 1375.479 kb on + strand at 1375.479 kb on + strand at 1375.479 kb on + strand at 1375.479 kb on + strand at 1375.479 kb on + strand at 1375.479 kb on + strand at 1375.479 kb on + strand at 1375.479 kb on + strand at 1375.480 kb on - strand at 1375.480 kb on - strand at 1375.480 kb on - strand at 1375.480 kb on - strand at 1375.480 kb on - strand at 1375.480 kb on - strand at 1375.480 kb on - strand at 1375.480 kb on - strand at 1375.480 kb on - strand at 1375.480 kb on - strand at 1375.480 kb on - strand at 1375.480 kb on - strand at 1375.480 kb on - strand at 1375.480 kb on - strand at 1375.480 kb on - strand at 1375.480 kb on - strand at 1375.480 kb on - strand at 1375.480 kb on - strand at 1375.480 kb on - strand at 1375.481 kb on + strand at 1375.481 kb on + strand at 1375.704 kb on + strand, within Psyr_1218 at 1375.704 kb on + strand, within Psyr_1218 at 1375.853 kb on - strand, within Psyr_1218 at 1375.853 kb on - strand, within Psyr_1218 at 1376.155 kb on + strand, within Psyr_1218 at 1376.155 kb on + strand, within Psyr_1218 at 1376.155 kb on + strand, within Psyr_1218 at 1376.155 kb on + strand, within Psyr_1218 at 1376.155 kb on + strand, within Psyr_1218 at 1376.155 kb on + strand, within Psyr_1218 at 1376.155 kb on + strand, within Psyr_1218 at 1376.156 kb on - strand, within Psyr_1218 at 1376.156 kb on - strand, within Psyr_1218 at 1376.156 kb on - strand, within Psyr_1218 at 1376.156 kb on - strand, within Psyr_1218 at 1376.156 kb on - strand, within Psyr_1218 at 1376.156 kb on - strand, within Psyr_1218 at 1376.229 kb on + strand, within Psyr_1218 at 1376.229 kb on + strand, within Psyr_1218 at 1376.229 kb on + strand, within Psyr_1218 at 1376.230 kb on - strand, within Psyr_1218 at 1376.230 kb on - strand, within Psyr_1218 at 1376.230 kb on - strand, within Psyr_1218 at 1376.331 kb on + strand, within Psyr_1218 at 1376.332 kb on - strand, within Psyr_1218 at 1376.355 kb on + strand, within Psyr_1218 at 1376.356 kb on - strand, within Psyr_1218 at 1376.356 kb on - strand, within Psyr_1218
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Emodin 10 mM remove 1,374,040 - Psyr_1216 0.46 -0.9 1,374,051 - Psyr_1216 0.47 +1.0 1,374,151 + Psyr_1216 0.55 +0.5 1,374,152 - Psyr_1216 0.55 -0.2 1,374,152 - Psyr_1216 0.55 +0.3 1,374,170 + Psyr_1216 0.57 +4.5 1,374,171 - Psyr_1216 0.57 +0.4 1,374,171 - Psyr_1216 0.57 +0.7 1,374,174 + Psyr_1216 0.57 +1.3 1,374,174 + Psyr_1216 0.57 +1.0 1,374,174 + Psyr_1216 0.57 +0.1 1,374,174 + Psyr_1216 0.57 +0.7 1,374,174 + Psyr_1216 0.57 +0.9 1,374,174 + Psyr_1216 0.57 -0.8 1,374,174 + Psyr_1216 0.57 +0.2 1,374,174 + Psyr_1216 0.57 -0.1 1,374,175 - Psyr_1216 0.57 -1.2 1,374,175 - Psyr_1216 0.57 +0.9 1,374,175 - Psyr_1216 0.57 -1.5 1,374,175 - Psyr_1216 0.57 -0.5 1,374,175 - Psyr_1216 0.57 -0.2 1,374,175 - Psyr_1216 0.57 +0.9 1,374,175 - Psyr_1216 0.57 +0.8 1,374,208 + Psyr_1216 0.60 +0.1 1,374,208 + Psyr_1216 0.60 +0.2 1,374,209 - Psyr_1216 0.60 +0.3 1,374,209 - Psyr_1216 0.60 +0.8 1,374,209 - Psyr_1216 0.60 +0.1 1,374,366 + Psyr_1216 0.73 +0.7 1,374,367 - Psyr_1216 0.74 +0.6 1,374,583 + -0.9 1,374,583 + -1.9 1,374,584 - +0.9 1,374,584 - -0.7 1,374,584 - -0.1 1,374,605 - -0.6 1,374,706 - -0.2 1,374,814 - +1.5 1,375,070 - Psyr_1217 0.40 +0.3 1,375,070 - Psyr_1217 0.40 +2.7 1,375,195 + Psyr_1217 0.63 +0.3 1,375,195 + Psyr_1217 0.63 +0.6 1,375,195 + Psyr_1217 0.63 +0.9 1,375,196 - Psyr_1217 0.63 -0.6 1,375,196 - Psyr_1217 0.63 +3.9 1,375,196 - Psyr_1217 0.63 -0.4 1,375,226 - Psyr_1217 0.68 +1.3 1,375,384 + -0.7 1,375,384 + +0.9 1,375,384 + -0.6 1,375,384 + -0.7 1,375,384 + +0.3 1,375,384 + +1.8 1,375,384 + +1.1 1,375,384 + +0.5 1,375,385 - -0.9 1,375,385 - -1.2 1,375,385 - -1.1 1,375,385 - +0.4 1,375,385 - +0.3 1,375,385 - -1.1 1,375,385 - +0.3 1,375,385 - +0.2 1,375,385 - +0.4 1,375,385 - +0.6 1,375,385 - -0.7 1,375,385 - +0.4 1,375,385 - +0.7 1,375,410 + -0.2 1,375,410 + +0.3 1,375,410 + +2.7 1,375,410 + +0.6 1,375,410 + +0.7 1,375,410 + -0.4 1,375,411 - -0.9 1,375,411 - -1.5 1,375,411 - -0.8 1,375,411 - +0.0 1,375,431 + -1.5 1,375,431 + +1.9 1,375,479 + +2.7 1,375,479 + -0.5 1,375,479 + +1.6 1,375,479 + -0.3 1,375,479 + +0.1 1,375,479 + +0.7 1,375,479 + +1.2 1,375,479 + -1.0 1,375,479 + +0.8 1,375,479 + +1.0 1,375,479 + -0.5 1,375,479 + +0.4 1,375,479 + +0.4 1,375,479 + +0.7 1,375,479 + -1.1 1,375,479 + +0.8 1,375,479 + -0.8 1,375,479 + -1.2 1,375,479 + -0.8 1,375,479 + +0.3 1,375,479 + +0.4 1,375,479 + +0.8 1,375,479 + +1.3 1,375,480 - +1.1 1,375,480 - -0.0 1,375,480 - -0.2 1,375,480 - +1.2 1,375,480 - -0.6 1,375,480 - +0.5 1,375,480 - -0.4 1,375,480 - -0.4 1,375,480 - -0.9 1,375,480 - +0.6 1,375,480 - +2.3 1,375,480 - +1.1 1,375,480 - +0.5 1,375,480 - +1.1 1,375,480 - +0.4 1,375,480 - +0.3 1,375,480 - +0.4 1,375,480 - +0.5 1,375,480 - +0.2 1,375,481 + +0.6 1,375,481 + +1.1 1,375,704 + Psyr_1218 0.10 -0.9 1,375,704 + Psyr_1218 0.10 +1.7 1,375,853 - Psyr_1218 0.17 -0.6 1,375,853 - Psyr_1218 0.17 -0.3 1,376,155 + Psyr_1218 0.30 +0.4 1,376,155 + Psyr_1218 0.30 -1.2 1,376,155 + Psyr_1218 0.30 -0.3 1,376,155 + Psyr_1218 0.30 +0.5 1,376,155 + Psyr_1218 0.30 +0.5 1,376,155 + Psyr_1218 0.30 +0.3 1,376,155 + Psyr_1218 0.30 +4.1 1,376,156 - Psyr_1218 0.30 -0.5 1,376,156 - Psyr_1218 0.30 -0.7 1,376,156 - Psyr_1218 0.30 -1.1 1,376,156 - Psyr_1218 0.30 -0.5 1,376,156 - Psyr_1218 0.30 +0.3 1,376,156 - Psyr_1218 0.30 +1.0 1,376,229 + Psyr_1218 0.33 +0.9 1,376,229 + Psyr_1218 0.33 -0.7 1,376,229 + Psyr_1218 0.33 -0.7 1,376,230 - Psyr_1218 0.33 -0.0 1,376,230 - Psyr_1218 0.33 -0.2 1,376,230 - Psyr_1218 0.33 +0.1 1,376,331 + Psyr_1218 0.37 +1.1 1,376,332 - Psyr_1218 0.37 +1.1 1,376,355 + Psyr_1218 0.38 -0.2 1,376,356 - Psyr_1218 0.39 -0.7 1,376,356 - Psyr_1218 0.39 -1.8
Or see this region's nucleotide sequence