Experiment: KB with Emodin 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0455 and Psyr_0456 are separated by 357 nucleotides Psyr_0456 and Psyr_0457 are separated by 27 nucleotides Psyr_0457 and Psyr_0458 are separated by 393 nucleotides
Psyr_0455: Psyr_0455 - Amine oxidase, at 491,164 to 493,038
_0455
Psyr_0456: Psyr_0456 - Cytochrome B561, bacterial, at 493,396 to 493,944
_0456
Psyr_0457: Psyr_0457 - YceI, at 493,972 to 494,550
_0457
Psyr_0458: Psyr_0458 - Helicase, C-terminal:Type III restriction enzyme, res subunit:DEAD/DEAH box helicase, N-terminal, at 494,944 to 496,833
_0458
Position (kb) 493
494
495 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 493.091 kb on - strand at 493.110 kb on + strand at 493.111 kb on - strand at 493.111 kb on - strand at 493.111 kb on - strand at 493.283 kb on + strand at 493.284 kb on - strand at 493.363 kb on + strand at 493.363 kb on + strand at 493.363 kb on + strand at 493.364 kb on - strand at 493.364 kb on - strand at 493.364 kb on - strand at 493.389 kb on - strand at 493.389 kb on - strand at 493.389 kb on - strand at 493.394 kb on + strand at 493.394 kb on + strand at 493.395 kb on - strand at 493.395 kb on - strand at 493.403 kb on + strand at 493.403 kb on + strand at 493.404 kb on - strand at 493.404 kb on - strand at 493.404 kb on - strand at 493.407 kb on + strand at 493.407 kb on + strand at 493.407 kb on + strand at 493.407 kb on + strand at 493.407 kb on + strand at 493.407 kb on + strand at 493.407 kb on + strand at 493.408 kb on - strand at 493.408 kb on - strand at 493.408 kb on - strand at 493.408 kb on - strand at 493.408 kb on - strand at 493.408 kb on - strand at 493.408 kb on - strand at 493.408 kb on - strand at 493.514 kb on - strand, within Psyr_0456 at 493.514 kb on - strand, within Psyr_0456 at 493.516 kb on + strand, within Psyr_0456 at 493.516 kb on + strand, within Psyr_0456 at 493.516 kb on + strand, within Psyr_0456 at 493.516 kb on + strand, within Psyr_0456 at 493.516 kb on + strand, within Psyr_0456 at 493.516 kb on + strand, within Psyr_0456 at 493.516 kb on + strand, within Psyr_0456 at 493.517 kb on - strand, within Psyr_0456 at 493.517 kb on - strand, within Psyr_0456 at 493.517 kb on - strand, within Psyr_0456 at 493.521 kb on + strand, within Psyr_0456 at 493.522 kb on - strand, within Psyr_0456 at 493.522 kb on - strand, within Psyr_0456 at 493.522 kb on - strand, within Psyr_0456 at 493.522 kb on - strand, within Psyr_0456 at 493.522 kb on - strand, within Psyr_0456 at 493.639 kb on + strand, within Psyr_0456 at 493.640 kb on - strand, within Psyr_0456 at 493.640 kb on - strand, within Psyr_0456 at 493.640 kb on - strand, within Psyr_0456 at 493.644 kb on + strand, within Psyr_0456 at 493.644 kb on + strand, within Psyr_0456 at 493.644 kb on + strand, within Psyr_0456 at 493.644 kb on + strand, within Psyr_0456 at 493.645 kb on - strand, within Psyr_0456 at 493.645 kb on - strand, within Psyr_0456 at 493.687 kb on + strand, within Psyr_0456 at 493.687 kb on + strand, within Psyr_0456 at 493.688 kb on - strand, within Psyr_0456 at 493.688 kb on - strand, within Psyr_0456 at 493.834 kb on + strand, within Psyr_0456 at 493.835 kb on - strand, within Psyr_0456 at 493.835 kb on - strand, within Psyr_0456 at 493.835 kb on - strand, within Psyr_0456 at 493.835 kb on - strand, within Psyr_0456 at 493.926 kb on + strand at 493.926 kb on + strand at 493.927 kb on - strand at 493.927 kb on - strand at 493.938 kb on + strand at 493.938 kb on + strand at 493.939 kb on - strand at 493.939 kb on - strand at 493.965 kb on + strand at 494.047 kb on + strand, within Psyr_0457 at 494.047 kb on + strand, within Psyr_0457 at 494.047 kb on + strand, within Psyr_0457 at 494.047 kb on + strand, within Psyr_0457 at 494.048 kb on - strand, within Psyr_0457 at 494.108 kb on - strand, within Psyr_0457 at 494.108 kb on - strand, within Psyr_0457 at 494.124 kb on + strand, within Psyr_0457 at 494.124 kb on + strand, within Psyr_0457 at 494.125 kb on - strand, within Psyr_0457 at 494.278 kb on + strand, within Psyr_0457 at 494.278 kb on + strand, within Psyr_0457 at 494.278 kb on + strand, within Psyr_0457 at 494.366 kb on + strand, within Psyr_0457 at 494.537 kb on + strand at 494.538 kb on - strand at 494.538 kb on - strand at 494.548 kb on + strand at 494.548 kb on + strand at 494.548 kb on + strand at 494.548 kb on + strand at 494.548 kb on + strand at 494.549 kb on - strand at 494.549 kb on - strand at 494.549 kb on - strand at 494.549 kb on - strand at 494.549 kb on - strand at 494.549 kb on - strand at 494.665 kb on + strand at 494.665 kb on + strand at 494.666 kb on - strand at 494.667 kb on + strand at 494.667 kb on + strand at 494.667 kb on + strand at 494.667 kb on + strand at 494.667 kb on + strand at 494.667 kb on + strand at 494.667 kb on + strand at 494.667 kb on + strand at 494.667 kb on + strand at 494.667 kb on + strand at 494.667 kb on + strand at 494.667 kb on + strand at 494.667 kb on + strand at 494.667 kb on + strand at 494.667 kb on + strand at 494.667 kb on + strand at 494.667 kb on + strand at 494.667 kb on + strand at 494.667 kb on + strand at 494.667 kb on + strand at 494.667 kb on + strand at 494.667 kb on + strand at 494.667 kb on + strand at 494.668 kb on - strand at 494.668 kb on - strand at 494.668 kb on - strand at 494.668 kb on - strand at 494.668 kb on - strand at 494.668 kb on - strand at 494.668 kb on - strand at 494.668 kb on - strand at 494.668 kb on - strand at 494.668 kb on - strand at 494.668 kb on - strand at 494.668 kb on - strand at 494.668 kb on - strand at 494.668 kb on - strand at 494.668 kb on - strand at 494.668 kb on - strand at 494.668 kb on - strand at 494.752 kb on + strand at 494.752 kb on + strand at 494.752 kb on + strand at 494.752 kb on + strand at 494.752 kb on + strand at 494.752 kb on + strand at 494.752 kb on + strand at 494.753 kb on - strand at 494.753 kb on - strand at 494.753 kb on - strand at 494.753 kb on - strand at 494.753 kb on - strand at 494.754 kb on + strand at 494.808 kb on + strand at 494.839 kb on + strand at 494.839 kb on + strand at 494.839 kb on + strand at 494.839 kb on + strand at 494.839 kb on + strand at 494.839 kb on + strand at 494.840 kb on - strand at 494.840 kb on - strand at 494.840 kb on - strand at 494.840 kb on - strand at 494.840 kb on - strand at 494.840 kb on - strand at 494.840 kb on - strand at 494.843 kb on + strand at 494.843 kb on + strand at 494.843 kb on + strand at 494.844 kb on - strand at 494.844 kb on - strand at 494.844 kb on - strand at 494.889 kb on - strand at 494.889 kb on - strand at 495.362 kb on + strand, within Psyr_0458 at 495.362 kb on + strand, within Psyr_0458 at 495.363 kb on - strand, within Psyr_0458 at 495.388 kb on + strand, within Psyr_0458 at 495.388 kb on + strand, within Psyr_0458 at 495.389 kb on - strand, within Psyr_0458 at 495.389 kb on - strand, within Psyr_0458
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Emodin 10 mM remove 493,091 - +0.4 493,110 + -0.8 493,111 - +1.7 493,111 - +2.2 493,111 - +0.1 493,283 + -2.5 493,284 - -0.1 493,363 + +0.1 493,363 + -0.9 493,363 + -1.9 493,364 - -0.4 493,364 - +0.8 493,364 - +0.8 493,389 - +1.2 493,389 - +0.5 493,389 - -0.5 493,394 + +1.8 493,394 + -1.6 493,395 - +0.5 493,395 - +0.2 493,403 + -0.5 493,403 + -0.3 493,404 - -1.0 493,404 - -0.5 493,404 - -0.2 493,407 + -2.0 493,407 + -0.9 493,407 + +1.2 493,407 + +1.2 493,407 + +0.4 493,407 + -1.1 493,407 + -0.5 493,408 - +2.5 493,408 - -0.4 493,408 - -0.1 493,408 - +0.8 493,408 - +0.2 493,408 - -0.2 493,408 - -0.6 493,408 - -0.5 493,514 - Psyr_0456 0.21 +0.0 493,514 - Psyr_0456 0.21 -2.1 493,516 + Psyr_0456 0.22 +1.5 493,516 + Psyr_0456 0.22 +0.8 493,516 + Psyr_0456 0.22 +1.0 493,516 + Psyr_0456 0.22 -0.4 493,516 + Psyr_0456 0.22 +0.6 493,516 + Psyr_0456 0.22 -0.4 493,516 + Psyr_0456 0.22 +0.5 493,517 - Psyr_0456 0.22 -0.6 493,517 - Psyr_0456 0.22 +0.2 493,517 - Psyr_0456 0.22 +2.8 493,521 + Psyr_0456 0.23 +0.1 493,522 - Psyr_0456 0.23 -1.0 493,522 - Psyr_0456 0.23 -0.8 493,522 - Psyr_0456 0.23 -1.1 493,522 - Psyr_0456 0.23 +1.2 493,522 - Psyr_0456 0.23 +0.6 493,639 + Psyr_0456 0.44 -0.5 493,640 - Psyr_0456 0.44 +0.1 493,640 - Psyr_0456 0.44 +0.2 493,640 - Psyr_0456 0.44 +0.0 493,644 + Psyr_0456 0.45 +0.9 493,644 + Psyr_0456 0.45 -3.1 493,644 + Psyr_0456 0.45 +0.1 493,644 + Psyr_0456 0.45 -0.5 493,645 - Psyr_0456 0.45 -1.1 493,645 - Psyr_0456 0.45 -2.1 493,687 + Psyr_0456 0.53 +0.2 493,687 + Psyr_0456 0.53 -1.3 493,688 - Psyr_0456 0.53 -0.8 493,688 - Psyr_0456 0.53 +0.5 493,834 + Psyr_0456 0.80 -1.4 493,835 - Psyr_0456 0.80 -1.0 493,835 - Psyr_0456 0.80 -0.4 493,835 - Psyr_0456 0.80 +0.1 493,835 - Psyr_0456 0.80 +0.1 493,926 + +1.2 493,926 + +0.4 493,927 - -1.3 493,927 - -1.0 493,938 + -0.4 493,938 + -1.5 493,939 - -0.4 493,939 - +0.0 493,965 + -0.8 494,047 + Psyr_0457 0.13 -0.2 494,047 + Psyr_0457 0.13 -0.2 494,047 + Psyr_0457 0.13 -0.5 494,047 + Psyr_0457 0.13 -0.8 494,048 - Psyr_0457 0.13 -2.1 494,108 - Psyr_0457 0.23 -1.8 494,108 - Psyr_0457 0.23 -0.8 494,124 + Psyr_0457 0.26 -0.5 494,124 + Psyr_0457 0.26 -0.6 494,125 - Psyr_0457 0.26 +0.3 494,278 + Psyr_0457 0.53 -1.7 494,278 + Psyr_0457 0.53 -1.2 494,278 + Psyr_0457 0.53 +3.0 494,366 + Psyr_0457 0.68 +0.5 494,537 + -0.8 494,538 - +0.1 494,538 - +0.8 494,548 + -1.0 494,548 + -0.1 494,548 + -1.0 494,548 + +0.2 494,548 + -0.4 494,549 - -0.9 494,549 - +0.1 494,549 - +1.0 494,549 - -0.5 494,549 - +0.7 494,549 - +0.7 494,665 + -1.4 494,665 + +0.1 494,666 - -0.2 494,667 + -0.8 494,667 + +0.0 494,667 + +0.0 494,667 + -0.4 494,667 + -1.2 494,667 + +0.0 494,667 + -0.7 494,667 + -0.4 494,667 + +1.6 494,667 + +1.2 494,667 + +1.1 494,667 + -0.2 494,667 + -2.2 494,667 + +0.1 494,667 + -0.8 494,667 + +0.0 494,667 + +0.6 494,667 + -0.7 494,667 + -0.1 494,667 + +0.6 494,667 + -0.9 494,667 + +0.6 494,667 + -0.2 494,668 - +2.2 494,668 - -0.5 494,668 - +0.6 494,668 - -0.3 494,668 - -0.5 494,668 - -0.1 494,668 - -0.9 494,668 - +1.0 494,668 - +0.8 494,668 - -0.1 494,668 - -0.4 494,668 - -0.8 494,668 - +1.1 494,668 - +3.5 494,668 - +0.7 494,668 - -0.1 494,668 - -0.2 494,752 + -0.2 494,752 + -0.6 494,752 + +0.8 494,752 + +0.7 494,752 + +0.4 494,752 + +1.0 494,752 + +1.4 494,753 - -1.1 494,753 - +0.3 494,753 - +0.1 494,753 - +0.5 494,753 - -2.5 494,754 + -1.0 494,808 + +0.1 494,839 + -0.5 494,839 + -0.1 494,839 + +0.1 494,839 + +0.5 494,839 + +1.2 494,839 + -0.3 494,840 - +0.2 494,840 - +0.3 494,840 - +1.7 494,840 - +0.4 494,840 - +0.2 494,840 - -0.2 494,840 - -1.6 494,843 + -0.1 494,843 + -0.0 494,843 + +0.8 494,844 - +0.9 494,844 - +0.2 494,844 - +0.9 494,889 - +0.4 494,889 - +0.7 495,362 + Psyr_0458 0.22 +1.4 495,362 + Psyr_0458 0.22 +0.8 495,363 - Psyr_0458 0.22 +0.7 495,388 + Psyr_0458 0.23 +0.1 495,388 + Psyr_0458 0.23 +1.3 495,389 - Psyr_0458 0.24 -1.2 495,389 - Psyr_0458 0.24 +0.4
Or see this region's nucleotide sequence