Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0334

Experiment: KB with Emodin 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0333 and Psyr_0334 are separated by 35 nucleotidesPsyr_0334 and Psyr_0335 are separated by 48 nucleotides Psyr_0333: Psyr_0333 - hypothetical protein, at 353,004 to 354,185 _0333 Psyr_0334: Psyr_0334 - ectoine synthase, at 354,221 to 354,607 _0334 Psyr_0335: Psyr_0335 - membrane protein, putative, at 354,656 to 355,882 _0335 Position (kb) 354 355Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 353.224 kb on + strand, within Psyr_0333at 353.224 kb on + strand, within Psyr_0333at 353.224 kb on + strand, within Psyr_0333at 353.330 kb on - strand, within Psyr_0333at 353.330 kb on - strand, within Psyr_0333at 353.330 kb on - strand, within Psyr_0333at 353.378 kb on + strand, within Psyr_0333at 353.379 kb on - strand, within Psyr_0333at 353.379 kb on - strand, within Psyr_0333at 353.379 kb on - strand, within Psyr_0333at 353.466 kb on - strand, within Psyr_0333at 353.474 kb on - strand, within Psyr_0333at 353.700 kb on + strand, within Psyr_0333at 353.700 kb on + strand, within Psyr_0333at 353.701 kb on - strand, within Psyr_0333at 353.701 kb on - strand, within Psyr_0333at 353.792 kb on - strand, within Psyr_0333at 353.868 kb on + strand, within Psyr_0333at 353.886 kb on + strand, within Psyr_0333at 353.886 kb on + strand, within Psyr_0333at 353.886 kb on + strand, within Psyr_0333at 353.886 kb on + strand, within Psyr_0333at 353.886 kb on + strand, within Psyr_0333at 353.887 kb on - strand, within Psyr_0333at 353.887 kb on - strand, within Psyr_0333at 353.887 kb on - strand, within Psyr_0333at 353.887 kb on - strand, within Psyr_0333at 353.887 kb on - strand, within Psyr_0333at 353.887 kb on - strand, within Psyr_0333at 353.979 kb on + strand, within Psyr_0333at 354.260 kb on + strand, within Psyr_0334at 354.260 kb on + strand, within Psyr_0334at 354.260 kb on + strand, within Psyr_0334at 354.261 kb on - strand, within Psyr_0334at 354.326 kb on - strand, within Psyr_0334at 354.398 kb on + strand, within Psyr_0334at 354.399 kb on - strand, within Psyr_0334at 354.444 kb on + strand, within Psyr_0334at 354.444 kb on + strand, within Psyr_0334at 354.444 kb on + strand, within Psyr_0334at 354.444 kb on + strand, within Psyr_0334at 354.444 kb on + strand, within Psyr_0334at 354.444 kb on + strand, within Psyr_0334at 354.445 kb on - strand, within Psyr_0334at 354.445 kb on - strand, within Psyr_0334at 354.445 kb on - strand, within Psyr_0334at 354.445 kb on - strand, within Psyr_0334at 354.445 kb on - strand, within Psyr_0334at 354.470 kb on + strand, within Psyr_0334at 354.470 kb on + strand, within Psyr_0334at 354.470 kb on + strand, within Psyr_0334at 354.470 kb on + strand, within Psyr_0334at 354.470 kb on + strand, within Psyr_0334at 354.470 kb on + strand, within Psyr_0334at 354.470 kb on + strand, within Psyr_0334at 354.470 kb on + strand, within Psyr_0334at 354.470 kb on + strand, within Psyr_0334at 354.470 kb on + strand, within Psyr_0334at 354.470 kb on + strand, within Psyr_0334at 354.470 kb on + strand, within Psyr_0334at 354.470 kb on + strand, within Psyr_0334at 354.470 kb on + strand, within Psyr_0334at 354.470 kb on + strand, within Psyr_0334at 354.470 kb on + strand, within Psyr_0334at 354.470 kb on + strand, within Psyr_0334at 354.470 kb on + strand, within Psyr_0334at 354.470 kb on + strand, within Psyr_0334at 354.470 kb on + strand, within Psyr_0334at 354.470 kb on + strand, within Psyr_0334at 354.470 kb on + strand, within Psyr_0334at 354.470 kb on + strand, within Psyr_0334at 354.470 kb on + strand, within Psyr_0334at 354.470 kb on + strand, within Psyr_0334at 354.471 kb on - strand, within Psyr_0334at 354.471 kb on - strand, within Psyr_0334at 354.471 kb on - strand, within Psyr_0334at 354.471 kb on - strand, within Psyr_0334at 354.471 kb on - strand, within Psyr_0334at 354.471 kb on - strand, within Psyr_0334at 354.471 kb on - strand, within Psyr_0334at 354.471 kb on - strand, within Psyr_0334at 354.471 kb on - strand, within Psyr_0334at 354.471 kb on - strand, within Psyr_0334at 354.471 kb on - strand, within Psyr_0334at 354.471 kb on - strand, within Psyr_0334at 354.471 kb on - strand, within Psyr_0334at 354.471 kb on - strand, within Psyr_0334at 354.471 kb on - strand, within Psyr_0334at 354.471 kb on - strand, within Psyr_0334at 354.471 kb on - strand, within Psyr_0334at 354.471 kb on - strand, within Psyr_0334at 354.471 kb on - strand, within Psyr_0334at 354.471 kb on - strand, within Psyr_0334at 354.471 kb on - strand, within Psyr_0334at 354.471 kb on - strand, within Psyr_0334at 354.471 kb on - strand, within Psyr_0334at 354.471 kb on - strand, within Psyr_0334at 354.471 kb on - strand, within Psyr_0334at 354.575 kb on - strandat 354.603 kb on - strandat 354.603 kb on - strandat 354.603 kb on - strandat 354.605 kb on + strandat 354.606 kb on - strandat 354.606 kb on - strandat 354.606 kb on - strandat 354.606 kb on - strandat 354.606 kb on - strandat 354.661 kb on + strandat 354.669 kb on - strandat 354.669 kb on - strandat 354.682 kb on + strandat 354.683 kb on - strandat 354.745 kb on - strandat 354.745 kb on - strandat 354.849 kb on - strand, within Psyr_0335at 354.871 kb on + strand, within Psyr_0335at 354.872 kb on - strand, within Psyr_0335at 354.884 kb on + strand, within Psyr_0335at 354.885 kb on - strand, within Psyr_0335at 355.019 kb on + strand, within Psyr_0335at 355.019 kb on + strand, within Psyr_0335at 355.019 kb on + strand, within Psyr_0335at 355.020 kb on - strand, within Psyr_0335at 355.020 kb on - strand, within Psyr_0335at 355.020 kb on - strand, within Psyr_0335at 355.021 kb on + strand, within Psyr_0335at 355.021 kb on + strand, within Psyr_0335at 355.022 kb on - strand, within Psyr_0335at 355.034 kb on + strand, within Psyr_0335at 355.034 kb on + strand, within Psyr_0335at 355.034 kb on + strand, within Psyr_0335at 355.035 kb on - strand, within Psyr_0335at 355.035 kb on - strand, within Psyr_0335at 355.040 kb on + strand, within Psyr_0335at 355.040 kb on + strand, within Psyr_0335at 355.040 kb on + strand, within Psyr_0335at 355.041 kb on - strand, within Psyr_0335at 355.041 kb on - strand, within Psyr_0335at 355.058 kb on + strand, within Psyr_0335at 355.059 kb on - strand, within Psyr_0335at 355.125 kb on + strand, within Psyr_0335at 355.125 kb on + strand, within Psyr_0335at 355.126 kb on - strand, within Psyr_0335at 355.126 kb on - strand, within Psyr_0335at 355.388 kb on + strand, within Psyr_0335at 355.388 kb on + strand, within Psyr_0335at 355.388 kb on + strand, within Psyr_0335at 355.389 kb on - strand, within Psyr_0335at 355.409 kb on + strand, within Psyr_0335at 355.409 kb on + strand, within Psyr_0335at 355.409 kb on + strand, within Psyr_0335at 355.409 kb on + strand, within Psyr_0335at 355.409 kb on + strand, within Psyr_0335at 355.409 kb on + strand, within Psyr_0335at 355.409 kb on + strand, within Psyr_0335at 355.409 kb on + strand, within Psyr_0335at 355.410 kb on - strand, within Psyr_0335at 355.410 kb on - strand, within Psyr_0335at 355.410 kb on - strand, within Psyr_0335at 355.410 kb on - strand, within Psyr_0335at 355.410 kb on - strand, within Psyr_0335at 355.483 kb on + strand, within Psyr_0335at 355.534 kb on + strand, within Psyr_0335at 355.534 kb on + strand, within Psyr_0335at 355.535 kb on - strand, within Psyr_0335at 355.535 kb on - strand, within Psyr_0335

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Emodin 10 mM
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353,224 + Psyr_0333 0.19 -0.6
353,224 + Psyr_0333 0.19 +0.2
353,224 + Psyr_0333 0.19 +0.6
353,330 - Psyr_0333 0.28 +1.1
353,330 - Psyr_0333 0.28 +0.3
353,330 - Psyr_0333 0.28 +1.5
353,378 + Psyr_0333 0.32 -0.5
353,379 - Psyr_0333 0.32 +0.5
353,379 - Psyr_0333 0.32 +0.9
353,379 - Psyr_0333 0.32 +0.1
353,466 - Psyr_0333 0.39 +0.4
353,474 - Psyr_0333 0.40 -0.7
353,700 + Psyr_0333 0.59 +0.4
353,700 + Psyr_0333 0.59 -2.3
353,701 - Psyr_0333 0.59 -1.0
353,701 - Psyr_0333 0.59 +1.1
353,792 - Psyr_0333 0.67 -0.1
353,868 + Psyr_0333 0.73 -0.1
353,886 + Psyr_0333 0.75 +1.2
353,886 + Psyr_0333 0.75 -1.6
353,886 + Psyr_0333 0.75 +0.8
353,886 + Psyr_0333 0.75 +1.0
353,886 + Psyr_0333 0.75 +0.8
353,887 - Psyr_0333 0.75 +0.6
353,887 - Psyr_0333 0.75 -2.0
353,887 - Psyr_0333 0.75 -0.5
353,887 - Psyr_0333 0.75 -0.0
353,887 - Psyr_0333 0.75 -0.7
353,887 - Psyr_0333 0.75 -0.3
353,979 + Psyr_0333 0.82 +1.9
354,260 + Psyr_0334 0.10 +2.3
354,260 + Psyr_0334 0.10 +2.0
354,260 + Psyr_0334 0.10 +1.1
354,261 - Psyr_0334 0.10 -0.6
354,326 - Psyr_0334 0.27 +0.7
354,398 + Psyr_0334 0.46 -1.4
354,399 - Psyr_0334 0.46 -0.6
354,444 + Psyr_0334 0.58 -0.8
354,444 + Psyr_0334 0.58 +0.3
354,444 + Psyr_0334 0.58 -0.0
354,444 + Psyr_0334 0.58 -0.0
354,444 + Psyr_0334 0.58 +0.4
354,444 + Psyr_0334 0.58 -1.9
354,445 - Psyr_0334 0.58 -0.6
354,445 - Psyr_0334 0.58 -0.0
354,445 - Psyr_0334 0.58 +0.5
354,445 - Psyr_0334 0.58 -2.2
354,445 - Psyr_0334 0.58 +0.4
354,470 + Psyr_0334 0.64 -1.0
354,470 + Psyr_0334 0.64 +1.5
354,470 + Psyr_0334 0.64 -1.2
354,470 + Psyr_0334 0.64 +0.3
354,470 + Psyr_0334 0.64 +0.6
354,470 + Psyr_0334 0.64 +4.3
354,470 + Psyr_0334 0.64 +0.4
354,470 + Psyr_0334 0.64 -0.1
354,470 + Psyr_0334 0.64 -2.0
354,470 + Psyr_0334 0.64 -0.2
354,470 + Psyr_0334 0.64 +2.3
354,470 + Psyr_0334 0.64 +0.9
354,470 + Psyr_0334 0.64 +2.5
354,470 + Psyr_0334 0.64 +0.7
354,470 + Psyr_0334 0.64 -0.3
354,470 + Psyr_0334 0.64 -0.6
354,470 + Psyr_0334 0.64 -0.2
354,470 + Psyr_0334 0.64 -0.3
354,470 + Psyr_0334 0.64 -0.8
354,470 + Psyr_0334 0.64 -0.6
354,470 + Psyr_0334 0.64 -1.0
354,470 + Psyr_0334 0.64 +1.5
354,470 + Psyr_0334 0.64 +0.7
354,470 + Psyr_0334 0.64 -0.0
354,470 + Psyr_0334 0.64 +0.5
354,471 - Psyr_0334 0.65 -1.9
354,471 - Psyr_0334 0.65 +1.3
354,471 - Psyr_0334 0.65 +0.1
354,471 - Psyr_0334 0.65 -0.3
354,471 - Psyr_0334 0.65 +1.8
354,471 - Psyr_0334 0.65 +0.2
354,471 - Psyr_0334 0.65 -0.6
354,471 - Psyr_0334 0.65 +1.3
354,471 - Psyr_0334 0.65 +1.1
354,471 - Psyr_0334 0.65 -1.2
354,471 - Psyr_0334 0.65 -1.5
354,471 - Psyr_0334 0.65 +0.9
354,471 - Psyr_0334 0.65 +0.2
354,471 - Psyr_0334 0.65 +0.5
354,471 - Psyr_0334 0.65 +0.6
354,471 - Psyr_0334 0.65 -1.0
354,471 - Psyr_0334 0.65 +0.6
354,471 - Psyr_0334 0.65 +1.0
354,471 - Psyr_0334 0.65 -0.5
354,471 - Psyr_0334 0.65 +0.6
354,471 - Psyr_0334 0.65 +0.1
354,471 - Psyr_0334 0.65 +1.4
354,471 - Psyr_0334 0.65 +0.9
354,471 - Psyr_0334 0.65 -1.7
354,471 - Psyr_0334 0.65 -0.3
354,575 - -0.7
354,603 - -0.5
354,603 - -1.2
354,603 - +0.9
354,605 + +0.2
354,606 - -0.4
354,606 - +0.6
354,606 - -1.5
354,606 - +0.5
354,606 - -0.3
354,661 + -1.1
354,669 - -0.7
354,669 - +0.5
354,682 + +1.3
354,683 - +0.7
354,745 - -2.4
354,745 - +1.4
354,849 - Psyr_0335 0.16 -1.3
354,871 + Psyr_0335 0.18 +0.4
354,872 - Psyr_0335 0.18 +0.8
354,884 + Psyr_0335 0.19 +0.5
354,885 - Psyr_0335 0.19 -0.6
355,019 + Psyr_0335 0.30 +1.1
355,019 + Psyr_0335 0.30 +1.3
355,019 + Psyr_0335 0.30 -0.3
355,020 - Psyr_0335 0.30 -0.0
355,020 - Psyr_0335 0.30 -2.2
355,020 - Psyr_0335 0.30 +0.7
355,021 + Psyr_0335 0.30 +2.9
355,021 + Psyr_0335 0.30 -0.3
355,022 - Psyr_0335 0.30 -0.1
355,034 + Psyr_0335 0.31 -0.1
355,034 + Psyr_0335 0.31 +0.5
355,034 + Psyr_0335 0.31 +1.5
355,035 - Psyr_0335 0.31 -1.2
355,035 - Psyr_0335 0.31 -1.2
355,040 + Psyr_0335 0.31 +3.6
355,040 + Psyr_0335 0.31 +0.7
355,040 + Psyr_0335 0.31 +0.8
355,041 - Psyr_0335 0.31 -0.6
355,041 - Psyr_0335 0.31 -0.2
355,058 + Psyr_0335 0.33 -1.5
355,059 - Psyr_0335 0.33 -0.2
355,125 + Psyr_0335 0.38 -0.8
355,125 + Psyr_0335 0.38 +1.8
355,126 - Psyr_0335 0.38 +1.3
355,126 - Psyr_0335 0.38 +0.9
355,388 + Psyr_0335 0.60 +2.0
355,388 + Psyr_0335 0.60 +0.5
355,388 + Psyr_0335 0.60 +0.5
355,389 - Psyr_0335 0.60 -0.6
355,409 + Psyr_0335 0.61 -0.6
355,409 + Psyr_0335 0.61 -1.3
355,409 + Psyr_0335 0.61 +0.8
355,409 + Psyr_0335 0.61 -2.2
355,409 + Psyr_0335 0.61 -2.0
355,409 + Psyr_0335 0.61 -0.5
355,409 + Psyr_0335 0.61 -2.0
355,409 + Psyr_0335 0.61 +1.3
355,410 - Psyr_0335 0.61 -0.1
355,410 - Psyr_0335 0.61 +0.1
355,410 - Psyr_0335 0.61 +0.1
355,410 - Psyr_0335 0.61 -1.1
355,410 - Psyr_0335 0.61 +0.6
355,483 + Psyr_0335 0.67 -1.7
355,534 + Psyr_0335 0.72 +2.9
355,534 + Psyr_0335 0.72 -1.6
355,535 - Psyr_0335 0.72 -0.0
355,535 - Psyr_0335 0.72 +0.2

Or see this region's nucleotide sequence