Experiment: DinoMM minimal media with L-Histidine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_470 and HP15_471 are separated by 263 nucleotides HP15_471 and HP15_472 are separated by 251 nucleotides HP15_472 and HP15_473 are separated by 67 nucleotides
HP15_470: HP15_470 - primosome assembly protein PriA, at 478,384 to 480,558
_470
HP15_471: HP15_471 - ribosomal protein L31, at 480,822 to 481,043
_471
HP15_472: HP15_472 - malate dehydrogenase (oxaloacetate-decarboxylating), NADP(+), at 481,295 to 482,559
_472
HP15_473: HP15_473 - penicillin-binding protein, 1A family, at 482,627 to 485,116
_473
Position (kb) 481
482
483 Strain fitness (log2 ratio) -2
-1
0
1 at 480.558 kb on - strand at 480.558 kb on - strand at 480.602 kb on - strand at 480.663 kb on - strand at 481.413 kb on + strand at 481.421 kb on - strand at 481.531 kb on + strand, within HP15_472 at 481.862 kb on - strand, within HP15_472 at 481.960 kb on + strand, within HP15_472 at 482.096 kb on + strand, within HP15_472 at 482.349 kb on + strand, within HP15_472 at 482.382 kb on + strand, within HP15_472 at 482.382 kb on + strand, within HP15_472 at 482.390 kb on - strand, within HP15_472 at 482.416 kb on + strand, within HP15_472 at 482.451 kb on + strand at 482.519 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Histidine remove 480,558 - +0.4 480,558 - +0.8 480,602 - -0.3 480,663 - -0.5 481,413 + -2.2 481,421 - -0.1 481,531 + HP15_472 0.19 -1.3 481,862 - HP15_472 0.45 -1.3 481,960 + HP15_472 0.53 -0.1 482,096 + HP15_472 0.63 -1.0 482,349 + HP15_472 0.83 -0.4 482,382 + HP15_472 0.86 -1.1 482,382 + HP15_472 0.86 +1.5 482,390 - HP15_472 0.87 +0.8 482,416 + HP15_472 0.89 -1.7 482,451 + -0.6 482,519 - -0.7
Or see this region's nucleotide sequence