Experiment: DinoMM minimal media with L-Histidine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_p187g169 and HP15_p187g170 are separated by 468 nucleotides
HP15_p187g169: HP15_p187g169 - hypothetical protein, at 174,141 to 174,305
_p187g169
HP15_p187g170: HP15_p187g170 - initiator RepB protein, at 174,774 to 175,991
_p187g170
Position (kb)
174
175 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 173.176 kb on - strand at 173.262 kb on - strand at 173.298 kb on + strand at 173.308 kb on - strand at 173.329 kb on - strand at 173.431 kb on + strand at 173.514 kb on + strand at 173.519 kb on + strand at 173.521 kb on - strand at 173.522 kb on - strand at 173.527 kb on - strand at 173.535 kb on + strand at 173.565 kb on - strand at 173.649 kb on + strand at 173.649 kb on + strand at 173.649 kb on + strand at 173.649 kb on + strand at 173.649 kb on + strand at 173.657 kb on - strand at 173.657 kb on - strand at 173.659 kb on - strand at 173.661 kb on + strand at 173.662 kb on + strand at 173.669 kb on - strand at 173.669 kb on - strand at 173.723 kb on - strand at 173.759 kb on + strand at 173.834 kb on - strand at 173.854 kb on - strand at 173.860 kb on - strand at 173.860 kb on - strand at 173.862 kb on - strand at 173.935 kb on + strand at 174.003 kb on + strand at 174.003 kb on + strand at 174.003 kb on + strand at 174.004 kb on + strand at 174.051 kb on - strand at 174.098 kb on - strand at 174.109 kb on + strand at 174.118 kb on + strand at 174.120 kb on + strand at 174.192 kb on - strand, within HP15_p187g169 at 174.192 kb on - strand, within HP15_p187g169 at 174.225 kb on - strand, within HP15_p187g169 at 174.236 kb on - strand, within HP15_p187g169 at 174.267 kb on + strand, within HP15_p187g169 at 174.287 kb on - strand, within HP15_p187g169 at 174.288 kb on - strand, within HP15_p187g169 at 174.292 kb on - strand at 174.317 kb on - strand at 174.317 kb on - strand at 174.341 kb on - strand at 174.341 kb on - strand at 174.342 kb on - strand at 174.344 kb on + strand at 174.372 kb on - strand at 174.442 kb on - strand at 174.451 kb on + strand at 174.459 kb on - strand at 174.459 kb on - strand at 174.460 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Histidine remove 173,176 - -0.3 173,262 - -1.9 173,298 + +0.1 173,308 - -0.0 173,329 - -0.2 173,431 + +0.3 173,514 + +2.1 173,519 + -0.2 173,521 - +3.1 173,522 - +0.7 173,527 - +0.2 173,535 + -0.5 173,565 - +0.3 173,649 + +0.1 173,649 + -0.8 173,649 + +0.1 173,649 + +0.5 173,649 + +0.2 173,657 - -0.1 173,657 - -0.2 173,659 - +0.1 173,661 + -0.0 173,662 + -0.9 173,669 - -0.1 173,669 - +0.9 173,723 - +0.3 173,759 + +0.6 173,834 - +1.8 173,854 - +0.8 173,860 - -1.7 173,860 - +0.2 173,862 - -0.9 173,935 + -0.1 174,003 + -0.2 174,003 + +1.4 174,003 + +0.0 174,004 + +0.1 174,051 - +1.3 174,098 - +0.7 174,109 + -0.4 174,118 + +0.7 174,120 + +0.7 174,192 - HP15_p187g169 0.31 +0.6 174,192 - HP15_p187g169 0.31 +0.1 174,225 - HP15_p187g169 0.51 +0.6 174,236 - HP15_p187g169 0.58 +0.4 174,267 + HP15_p187g169 0.76 +1.4 174,287 - HP15_p187g169 0.88 +0.1 174,288 - HP15_p187g169 0.89 +0.4 174,292 - +0.2 174,317 - -0.3 174,317 - +0.1 174,341 - -1.6 174,341 - -1.3 174,342 - -0.2 174,344 + +1.7 174,372 - +0.6 174,442 - +0.3 174,451 + +0.3 174,459 - +1.3 174,459 - +0.4 174,460 + -0.7
Or see this region's nucleotide sequence