Strain Fitness in Marinobacter adhaerens HP15 around HP15_2684

Experiment: DinoMM minimal media with L-Histidine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2682 and HP15_2683 are separated by 58 nucleotidesHP15_2683 and HP15_2684 overlap by 1 nucleotidesHP15_2684 and HP15_2685 are separated by 31 nucleotidesHP15_2685 and HP15_2686 overlap by 4 nucleotides HP15_2682: HP15_2682 - TRAP dicarboxylate transporter- DctP subunit, at 2,830,129 to 2,831,094 _2682 HP15_2683: HP15_2683 - DctQ (C4-dicarboxylate permease, small subunit), at 2,831,153 to 2,831,671 _2683 HP15_2684: HP15_2684 - TRAP-type C4-dicarboxylate transport system, large permease component, at 2,831,671 to 2,832,978 _2684 HP15_2685: HP15_2685 - UPF0271 protein, LamB/YcsF family, at 2,833,010 to 2,833,744 _2685 HP15_2686: HP15_2686 - allophanate hydrolase subunit 1, at 2,833,741 to 2,834,433 _2686 Position (kb) 2831 2832 2833Strain fitness (log2 ratio) -3 -2 -1 0 1at 2830.759 kb on + strand, within HP15_2682at 2830.800 kb on + strand, within HP15_2682at 2831.069 kb on + strandat 2831.135 kb on + strandat 2831.150 kb on + strandat 2831.221 kb on - strand, within HP15_2683at 2831.309 kb on + strand, within HP15_2683at 2831.375 kb on + strand, within HP15_2683at 2831.385 kb on + strand, within HP15_2683at 2831.403 kb on - strand, within HP15_2683at 2831.636 kb on - strandat 2831.646 kb on - strandat 2831.695 kb on + strandat 2831.927 kb on - strand, within HP15_2684at 2831.927 kb on - strand, within HP15_2684at 2831.985 kb on - strand, within HP15_2684at 2831.985 kb on - strand, within HP15_2684at 2832.080 kb on - strand, within HP15_2684at 2832.080 kb on - strand, within HP15_2684at 2832.080 kb on - strand, within HP15_2684at 2832.119 kb on + strand, within HP15_2684at 2832.127 kb on - strand, within HP15_2684at 2832.200 kb on - strand, within HP15_2684at 2832.216 kb on - strand, within HP15_2684at 2832.258 kb on - strand, within HP15_2684at 2832.324 kb on + strand, within HP15_2684at 2832.327 kb on - strand, within HP15_2684at 2832.385 kb on + strand, within HP15_2684at 2832.388 kb on - strand, within HP15_2684at 2832.416 kb on + strand, within HP15_2684at 2832.481 kb on - strand, within HP15_2684at 2832.516 kb on - strand, within HP15_2684at 2832.564 kb on + strand, within HP15_2684at 2832.682 kb on - strand, within HP15_2684at 2832.711 kb on - strand, within HP15_2684at 2832.791 kb on + strand, within HP15_2684at 2832.809 kb on - strand, within HP15_2684at 2832.826 kb on - strand, within HP15_2684at 2832.858 kb on - strandat 2833.008 kb on - strandat 2833.141 kb on - strand, within HP15_2685at 2833.197 kb on + strand, within HP15_2685at 2833.205 kb on - strand, within HP15_2685at 2833.249 kb on + strand, within HP15_2685at 2833.489 kb on + strand, within HP15_2685at 2833.584 kb on + strand, within HP15_2685at 2833.652 kb on - strand, within HP15_2685at 2833.889 kb on + strand, within HP15_2686at 2833.889 kb on + strand, within HP15_2686at 2833.894 kb on + strand, within HP15_2686at 2833.940 kb on + strand, within HP15_2686

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Per-strain Table

Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Histidine
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2,830,759 + HP15_2682 0.65 +0.8
2,830,800 + HP15_2682 0.69 +0.8
2,831,069 + -0.1
2,831,135 + +0.1
2,831,150 + -0.7
2,831,221 - HP15_2683 0.13 +0.5
2,831,309 + HP15_2683 0.30 +0.7
2,831,375 + HP15_2683 0.43 +0.2
2,831,385 + HP15_2683 0.45 +0.4
2,831,403 - HP15_2683 0.48 +0.0
2,831,636 - -0.8
2,831,646 - -0.4
2,831,695 + +0.7
2,831,927 - HP15_2684 0.20 -1.2
2,831,927 - HP15_2684 0.20 -0.6
2,831,985 - HP15_2684 0.24 -0.8
2,831,985 - HP15_2684 0.24 -0.2
2,832,080 - HP15_2684 0.31 -0.7
2,832,080 - HP15_2684 0.31 -1.9
2,832,080 - HP15_2684 0.31 -0.1
2,832,119 + HP15_2684 0.34 -0.3
2,832,127 - HP15_2684 0.35 -0.5
2,832,200 - HP15_2684 0.40 +0.5
2,832,216 - HP15_2684 0.42 +1.5
2,832,258 - HP15_2684 0.45 -0.6
2,832,324 + HP15_2684 0.50 +0.2
2,832,327 - HP15_2684 0.50 -0.6
2,832,385 + HP15_2684 0.55 -0.3
2,832,388 - HP15_2684 0.55 -1.9
2,832,416 + HP15_2684 0.57 -0.0
2,832,481 - HP15_2684 0.62 -1.2
2,832,516 - HP15_2684 0.65 -1.1
2,832,564 + HP15_2684 0.68 -0.2
2,832,682 - HP15_2684 0.77 +0.4
2,832,711 - HP15_2684 0.80 +0.9
2,832,791 + HP15_2684 0.86 -0.6
2,832,809 - HP15_2684 0.87 -0.2
2,832,826 - HP15_2684 0.88 -0.7
2,832,858 - -1.4
2,833,008 - -0.8
2,833,141 - HP15_2685 0.18 -0.1
2,833,197 + HP15_2685 0.25 -0.5
2,833,205 - HP15_2685 0.27 -0.2
2,833,249 + HP15_2685 0.33 -2.9
2,833,489 + HP15_2685 0.65 -0.7
2,833,584 + HP15_2685 0.78 -1.7
2,833,652 - HP15_2685 0.87 +0.5
2,833,889 + HP15_2686 0.21 -2.3
2,833,889 + HP15_2686 0.21 +1.3
2,833,894 + HP15_2686 0.22 -2.2
2,833,940 + HP15_2686 0.29 -0.1

Or see this region's nucleotide sequence