Experiment: DinoMM minimal media with L-Histidine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2682 and HP15_2683 are separated by 58 nucleotides HP15_2683 and HP15_2684 overlap by 1 nucleotides HP15_2684 and HP15_2685 are separated by 31 nucleotides HP15_2685 and HP15_2686 overlap by 4 nucleotides
HP15_2682: HP15_2682 - TRAP dicarboxylate transporter- DctP subunit, at 2,830,129 to 2,831,094
_2682
HP15_2683: HP15_2683 - DctQ (C4-dicarboxylate permease, small subunit), at 2,831,153 to 2,831,671
_2683
HP15_2684: HP15_2684 - TRAP-type C4-dicarboxylate transport system, large permease component, at 2,831,671 to 2,832,978
_2684
HP15_2685: HP15_2685 - UPF0271 protein, LamB/YcsF family, at 2,833,010 to 2,833,744
_2685
HP15_2686: HP15_2686 - allophanate hydrolase subunit 1, at 2,833,741 to 2,834,433
_2686
Position (kb)
2831
2832
2833 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2830.759 kb on + strand, within HP15_2682 at 2830.800 kb on + strand, within HP15_2682 at 2831.069 kb on + strand at 2831.135 kb on + strand at 2831.150 kb on + strand at 2831.221 kb on - strand, within HP15_2683 at 2831.309 kb on + strand, within HP15_2683 at 2831.375 kb on + strand, within HP15_2683 at 2831.385 kb on + strand, within HP15_2683 at 2831.403 kb on - strand, within HP15_2683 at 2831.636 kb on - strand at 2831.646 kb on - strand at 2831.695 kb on + strand at 2831.927 kb on - strand, within HP15_2684 at 2831.927 kb on - strand, within HP15_2684 at 2831.985 kb on - strand, within HP15_2684 at 2831.985 kb on - strand, within HP15_2684 at 2832.080 kb on - strand, within HP15_2684 at 2832.080 kb on - strand, within HP15_2684 at 2832.080 kb on - strand, within HP15_2684 at 2832.119 kb on + strand, within HP15_2684 at 2832.127 kb on - strand, within HP15_2684 at 2832.200 kb on - strand, within HP15_2684 at 2832.216 kb on - strand, within HP15_2684 at 2832.258 kb on - strand, within HP15_2684 at 2832.324 kb on + strand, within HP15_2684 at 2832.327 kb on - strand, within HP15_2684 at 2832.385 kb on + strand, within HP15_2684 at 2832.388 kb on - strand, within HP15_2684 at 2832.416 kb on + strand, within HP15_2684 at 2832.481 kb on - strand, within HP15_2684 at 2832.516 kb on - strand, within HP15_2684 at 2832.564 kb on + strand, within HP15_2684 at 2832.682 kb on - strand, within HP15_2684 at 2832.711 kb on - strand, within HP15_2684 at 2832.791 kb on + strand, within HP15_2684 at 2832.809 kb on - strand, within HP15_2684 at 2832.826 kb on - strand, within HP15_2684 at 2832.858 kb on - strand at 2833.008 kb on - strand at 2833.141 kb on - strand, within HP15_2685 at 2833.197 kb on + strand, within HP15_2685 at 2833.205 kb on - strand, within HP15_2685 at 2833.249 kb on + strand, within HP15_2685 at 2833.489 kb on + strand, within HP15_2685 at 2833.584 kb on + strand, within HP15_2685 at 2833.652 kb on - strand, within HP15_2685 at 2833.889 kb on + strand, within HP15_2686 at 2833.889 kb on + strand, within HP15_2686 at 2833.894 kb on + strand, within HP15_2686 at 2833.940 kb on + strand, within HP15_2686
Per-strain Table
Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Histidine remove 2,830,759 + HP15_2682 0.65 +0.8 2,830,800 + HP15_2682 0.69 +0.8 2,831,069 + -0.1 2,831,135 + +0.1 2,831,150 + -0.7 2,831,221 - HP15_2683 0.13 +0.5 2,831,309 + HP15_2683 0.30 +0.7 2,831,375 + HP15_2683 0.43 +0.2 2,831,385 + HP15_2683 0.45 +0.4 2,831,403 - HP15_2683 0.48 +0.0 2,831,636 - -0.8 2,831,646 - -0.4 2,831,695 + +0.7 2,831,927 - HP15_2684 0.20 -1.2 2,831,927 - HP15_2684 0.20 -0.6 2,831,985 - HP15_2684 0.24 -0.8 2,831,985 - HP15_2684 0.24 -0.2 2,832,080 - HP15_2684 0.31 -0.7 2,832,080 - HP15_2684 0.31 -1.9 2,832,080 - HP15_2684 0.31 -0.1 2,832,119 + HP15_2684 0.34 -0.3 2,832,127 - HP15_2684 0.35 -0.5 2,832,200 - HP15_2684 0.40 +0.5 2,832,216 - HP15_2684 0.42 +1.5 2,832,258 - HP15_2684 0.45 -0.6 2,832,324 + HP15_2684 0.50 +0.2 2,832,327 - HP15_2684 0.50 -0.6 2,832,385 + HP15_2684 0.55 -0.3 2,832,388 - HP15_2684 0.55 -1.9 2,832,416 + HP15_2684 0.57 -0.0 2,832,481 - HP15_2684 0.62 -1.2 2,832,516 - HP15_2684 0.65 -1.1 2,832,564 + HP15_2684 0.68 -0.2 2,832,682 - HP15_2684 0.77 +0.4 2,832,711 - HP15_2684 0.80 +0.9 2,832,791 + HP15_2684 0.86 -0.6 2,832,809 - HP15_2684 0.87 -0.2 2,832,826 - HP15_2684 0.88 -0.7 2,832,858 - -1.4 2,833,008 - -0.8 2,833,141 - HP15_2685 0.18 -0.1 2,833,197 + HP15_2685 0.25 -0.5 2,833,205 - HP15_2685 0.27 -0.2 2,833,249 + HP15_2685 0.33 -2.9 2,833,489 + HP15_2685 0.65 -0.7 2,833,584 + HP15_2685 0.78 -1.7 2,833,652 - HP15_2685 0.87 +0.5 2,833,889 + HP15_2686 0.21 -2.3 2,833,889 + HP15_2686 0.21 +1.3 2,833,894 + HP15_2686 0.22 -2.2 2,833,940 + HP15_2686 0.29 -0.1
Or see this region's nucleotide sequence