Experiment: DinoMM minimal media with L-Histidine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2527 and HP15_2529 are separated by 67 nucleotides HP15_2529 and HP15_2528 are separated by 6 nucleotides HP15_2528 and HP15_2530 are separated by 95 nucleotides HP15_2530 and HP15_2531 are separated by 220 nucleotides
HP15_2527: HP15_2527 - DNA topoisomerase IV, subunit B, at 2,669,583 to 2,671,478
_2527
HP15_2529: HP15_2529 - conserved hypothetical protein, at 2,671,546 to 2,671,761
_2529
HP15_2528: HP15_2528 - hypothetical protein, at 2,671,768 to 2,671,923
_2528
HP15_2530: HP15_2530 - peptidase S8 and S53, subtilisin, kexin, sedolisin, at 2,672,019 to 2,674,580
_2530
HP15_2531: HP15_2531 - integral membrane protein, possible transporter, at 2,674,801 to 2,676,795
_2531
Position (kb)
2672
2673
2674
2675 Strain fitness (log2 ratio)
-1
0
1
2 at 2671.590 kb on + strand, within HP15_2529 at 2671.596 kb on - strand, within HP15_2529 at 2671.668 kb on + strand, within HP15_2529 at 2671.680 kb on + strand, within HP15_2529 at 2671.680 kb on + strand, within HP15_2529 at 2671.699 kb on + strand, within HP15_2529 at 2671.710 kb on + strand, within HP15_2529 at 2671.710 kb on + strand, within HP15_2529 at 2671.724 kb on - strand, within HP15_2529 at 2671.820 kb on - strand, within HP15_2528 at 2671.837 kb on - strand, within HP15_2528 at 2671.894 kb on + strand, within HP15_2528 at 2671.969 kb on - strand at 2671.985 kb on - strand at 2672.008 kb on + strand at 2672.008 kb on - strand at 2672.150 kb on + strand at 2672.218 kb on + strand at 2672.218 kb on + strand at 2672.256 kb on + strand at 2672.372 kb on + strand, within HP15_2530 at 2672.372 kb on + strand, within HP15_2530 at 2672.417 kb on + strand, within HP15_2530 at 2672.453 kb on + strand, within HP15_2530 at 2672.480 kb on - strand, within HP15_2530 at 2672.564 kb on + strand, within HP15_2530 at 2672.679 kb on + strand, within HP15_2530 at 2672.740 kb on + strand, within HP15_2530 at 2672.745 kb on + strand, within HP15_2530 at 2672.745 kb on + strand, within HP15_2530 at 2672.745 kb on + strand, within HP15_2530 at 2672.745 kb on + strand, within HP15_2530 at 2672.745 kb on + strand, within HP15_2530 at 2672.748 kb on - strand, within HP15_2530 at 2672.753 kb on - strand, within HP15_2530 at 2672.753 kb on - strand, within HP15_2530 at 2672.772 kb on - strand, within HP15_2530 at 2672.778 kb on + strand, within HP15_2530 at 2672.825 kb on + strand, within HP15_2530 at 2672.830 kb on + strand, within HP15_2530 at 2672.889 kb on + strand, within HP15_2530 at 2672.937 kb on + strand, within HP15_2530 at 2673.130 kb on - strand, within HP15_2530 at 2673.143 kb on + strand, within HP15_2530 at 2673.171 kb on - strand, within HP15_2530 at 2673.251 kb on - strand, within HP15_2530 at 2673.291 kb on + strand, within HP15_2530 at 2673.291 kb on + strand, within HP15_2530 at 2673.367 kb on + strand, within HP15_2530 at 2673.375 kb on - strand, within HP15_2530 at 2673.462 kb on + strand, within HP15_2530 at 2673.470 kb on - strand, within HP15_2530 at 2673.637 kb on + strand, within HP15_2530 at 2673.695 kb on - strand, within HP15_2530 at 2674.051 kb on - strand, within HP15_2530 at 2674.172 kb on + strand, within HP15_2530 at 2674.233 kb on + strand, within HP15_2530 at 2674.360 kb on + strand at 2674.368 kb on - strand at 2674.456 kb on - strand at 2674.582 kb on + strand at 2674.645 kb on + strand at 2674.684 kb on - strand at 2674.694 kb on + strand at 2674.808 kb on + strand at 2674.816 kb on - strand at 2674.816 kb on - strand at 2674.845 kb on + strand at 2674.853 kb on - strand at 2674.853 kb on - strand at 2674.870 kb on - strand at 2674.916 kb on + strand at 2675.034 kb on + strand, within HP15_2531 at 2675.034 kb on + strand, within HP15_2531 at 2675.042 kb on - strand, within HP15_2531 at 2675.069 kb on - strand, within HP15_2531 at 2675.162 kb on + strand, within HP15_2531 at 2675.172 kb on + strand, within HP15_2531 at 2675.172 kb on + strand, within HP15_2531 at 2675.180 kb on - strand, within HP15_2531 at 2675.260 kb on + strand, within HP15_2531 at 2675.320 kb on + strand, within HP15_2531 at 2675.320 kb on + strand, within HP15_2531 at 2675.320 kb on + strand, within HP15_2531 at 2675.328 kb on - strand, within HP15_2531 at 2675.336 kb on + strand, within HP15_2531 at 2675.336 kb on + strand, within HP15_2531 at 2675.336 kb on + strand, within HP15_2531 at 2675.336 kb on + strand, within HP15_2531 at 2675.344 kb on - strand, within HP15_2531 at 2675.394 kb on + strand, within HP15_2531
Per-strain Table
Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Histidine remove 2,671,590 + HP15_2529 0.20 +0.7 2,671,596 - HP15_2529 0.23 -0.1 2,671,668 + HP15_2529 0.56 -0.8 2,671,680 + HP15_2529 0.62 +2.1 2,671,680 + HP15_2529 0.62 +0.2 2,671,699 + HP15_2529 0.71 +0.0 2,671,710 + HP15_2529 0.76 -0.1 2,671,710 + HP15_2529 0.76 -0.3 2,671,724 - HP15_2529 0.82 +0.8 2,671,820 - HP15_2528 0.33 +0.1 2,671,837 - HP15_2528 0.44 +0.4 2,671,894 + HP15_2528 0.81 -0.9 2,671,969 - -0.3 2,671,985 - -0.5 2,672,008 + -0.9 2,672,008 - -0.2 2,672,150 + +1.5 2,672,218 + -0.1 2,672,218 + +0.2 2,672,256 + -0.5 2,672,372 + HP15_2530 0.14 +0.8 2,672,372 + HP15_2530 0.14 -0.3 2,672,417 + HP15_2530 0.16 +0.4 2,672,453 + HP15_2530 0.17 -0.8 2,672,480 - HP15_2530 0.18 -0.5 2,672,564 + HP15_2530 0.21 +0.2 2,672,679 + HP15_2530 0.26 -1.0 2,672,740 + HP15_2530 0.28 +1.5 2,672,745 + HP15_2530 0.28 -0.9 2,672,745 + HP15_2530 0.28 -0.0 2,672,745 + HP15_2530 0.28 -0.7 2,672,745 + HP15_2530 0.28 -0.7 2,672,745 + HP15_2530 0.28 -0.9 2,672,748 - HP15_2530 0.28 +0.0 2,672,753 - HP15_2530 0.29 -0.3 2,672,753 - HP15_2530 0.29 -1.1 2,672,772 - HP15_2530 0.29 +0.5 2,672,778 + HP15_2530 0.30 +0.5 2,672,825 + HP15_2530 0.31 -1.0 2,672,830 + HP15_2530 0.32 +0.3 2,672,889 + HP15_2530 0.34 -0.2 2,672,937 + HP15_2530 0.36 -0.0 2,673,130 - HP15_2530 0.43 -0.5 2,673,143 + HP15_2530 0.44 -0.7 2,673,171 - HP15_2530 0.45 +0.0 2,673,251 - HP15_2530 0.48 -0.1 2,673,291 + HP15_2530 0.50 +0.8 2,673,291 + HP15_2530 0.50 +0.1 2,673,367 + HP15_2530 0.53 -0.1 2,673,375 - HP15_2530 0.53 -0.8 2,673,462 + HP15_2530 0.56 -0.1 2,673,470 - HP15_2530 0.57 -0.9 2,673,637 + HP15_2530 0.63 +0.4 2,673,695 - HP15_2530 0.65 -0.6 2,674,051 - HP15_2530 0.79 -0.2 2,674,172 + HP15_2530 0.84 -0.7 2,674,233 + HP15_2530 0.86 +0.5 2,674,360 + +1.8 2,674,368 - -0.6 2,674,456 - -0.2 2,674,582 + -1.2 2,674,645 + -0.6 2,674,684 - +0.1 2,674,694 + +0.6 2,674,808 + -0.7 2,674,816 - +0.6 2,674,816 - +0.2 2,674,845 + +0.5 2,674,853 - +1.5 2,674,853 - -0.5 2,674,870 - -0.4 2,674,916 + -0.0 2,675,034 + HP15_2531 0.12 +0.8 2,675,034 + HP15_2531 0.12 +0.8 2,675,042 - HP15_2531 0.12 +0.3 2,675,069 - HP15_2531 0.13 +0.0 2,675,162 + HP15_2531 0.18 +0.2 2,675,172 + HP15_2531 0.19 +0.4 2,675,172 + HP15_2531 0.19 +0.8 2,675,180 - HP15_2531 0.19 -0.5 2,675,260 + HP15_2531 0.23 +0.6 2,675,320 + HP15_2531 0.26 +0.7 2,675,320 + HP15_2531 0.26 -0.3 2,675,320 + HP15_2531 0.26 +0.7 2,675,328 - HP15_2531 0.26 -0.4 2,675,336 + HP15_2531 0.27 +0.0 2,675,336 + HP15_2531 0.27 -0.6 2,675,336 + HP15_2531 0.27 -0.3 2,675,336 + HP15_2531 0.27 +0.4 2,675,344 - HP15_2531 0.27 +0.1 2,675,394 + HP15_2531 0.30 +0.1
Or see this region's nucleotide sequence