Strain Fitness in Marinobacter adhaerens HP15 around HP15_1252

Experiment: DinoMM minimal media with L-Histidine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1251 and HP15_1252 are separated by 6 nucleotidesHP15_1252 and HP15_1253 are separated by 213 nucleotidesHP15_1253 and HP15_1254 are separated by 16 nucleotides HP15_1251: HP15_1251 - large component of pyruvate transporter (actP-like) (from data), at 1,310,720 to 1,312,486 _1251 HP15_1252: HP15_1252 - small component of pyruvate transporter (TIGR03647) (from data), at 1,312,493 to 1,312,759 _1252 HP15_1253: HP15_1253 - DNA polymerase III, epsilon subunit, at 1,312,973 to 1,313,680 _1253 HP15_1254: HP15_1254 - cyclic nucleotide-binding domain (cNMP-BD) protein, at 1,313,697 to 1,315,613 _1254 Position (kb) 1312 1313Strain fitness (log2 ratio) -2 -1 0 1at 1311.936 kb on + strand, within HP15_1251at 1311.941 kb on + strand, within HP15_1251at 1311.949 kb on - strand, within HP15_1251at 1311.963 kb on - strand, within HP15_1251at 1312.019 kb on + strand, within HP15_1251at 1312.032 kb on + strand, within HP15_1251at 1312.068 kb on - strand, within HP15_1251at 1312.114 kb on - strand, within HP15_1251at 1312.383 kb on + strandat 1312.393 kb on - strandat 1312.401 kb on + strandat 1312.431 kb on + strandat 1312.581 kb on - strand, within HP15_1252at 1312.601 kb on + strand, within HP15_1252at 1312.750 kb on - strandat 1312.750 kb on - strandat 1312.917 kb on - strandat 1312.917 kb on - strandat 1312.917 kb on - strandat 1312.917 kb on - strandat 1312.998 kb on + strandat 1313.077 kb on + strand, within HP15_1253at 1313.139 kb on - strand, within HP15_1253at 1313.159 kb on + strand, within HP15_1253at 1313.167 kb on - strand, within HP15_1253at 1313.186 kb on - strand, within HP15_1253at 1313.186 kb on - strand, within HP15_1253at 1313.186 kb on - strand, within HP15_1253at 1313.441 kb on - strand, within HP15_1253at 1313.533 kb on - strand, within HP15_1253

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Per-strain Table

Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Histidine
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1,311,936 + HP15_1251 0.69 +0.0
1,311,941 + HP15_1251 0.69 +1.0
1,311,949 - HP15_1251 0.70 -1.0
1,311,963 - HP15_1251 0.70 -0.2
1,312,019 + HP15_1251 0.74 -1.5
1,312,032 + HP15_1251 0.74 -0.1
1,312,068 - HP15_1251 0.76 -0.1
1,312,114 - HP15_1251 0.79 -0.1
1,312,383 + -0.3
1,312,393 - -0.5
1,312,401 + -0.0
1,312,431 + -0.5
1,312,581 - HP15_1252 0.33 -1.3
1,312,601 + HP15_1252 0.40 -0.1
1,312,750 - -1.3
1,312,750 - +0.6
1,312,917 - +0.2
1,312,917 - +0.1
1,312,917 - -0.8
1,312,917 - -0.2
1,312,998 + -1.8
1,313,077 + HP15_1253 0.15 -1.1
1,313,139 - HP15_1253 0.23 +0.6
1,313,159 + HP15_1253 0.26 +0.0
1,313,167 - HP15_1253 0.27 +0.7
1,313,186 - HP15_1253 0.30 -1.2
1,313,186 - HP15_1253 0.30 +0.1
1,313,186 - HP15_1253 0.30 -0.4
1,313,441 - HP15_1253 0.66 +0.1
1,313,533 - HP15_1253 0.79 +1.5

Or see this region's nucleotide sequence