Experiment: Pyruvate (fermenting) with Na2S as sulfur source with Casaminos 0.2%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ldh and b1396 are separated by 411 nucleotides b1396 and tRNA-Glu are separated by 143 nucleotides tRNA-Glu and DVU0602 are separated by 88 nucleotides DVU0602 and DVU0603 are separated by 228 nucleotides DVU0603 and DVU0604 overlap by 4 nucleotides
DVU0600: ldh - L-lactate dehydrogenase (TIGR), at 670,757 to 671,686
ldh
DVU0601: b1396 - phenylacetic acid degradation protein PaaI (TIGR), at 672,098 to 672,532
b1396
DVU_tRNA-Glu-1: tRNA-Glu - tRNA with anticodon TTC for Glu (VIMSS-AUTO), at 672,676 to 672,752
tRNA-Glu
DVU0602: DVU0602 - hypothetical protein (TIGR), at 672,841 to 673,203
DVU0602
DVU0603: DVU0603 - hypothetical protein (TIGR), at 673,432 to 673,698
DVU0603
DVU0604: DVU0604 - hypothetical protein (TIGR), at 673,695 to 673,826
DVU0604
Position (kb) 672
673 Strain fitness (log2 ratio) -1
0
1 at 671.680 kb on + strand at 671.688 kb on - strand at 671.704 kb on - strand at 671.735 kb on + strand at 671.738 kb on - strand at 671.870 kb on + strand at 671.994 kb on + strand at 672.072 kb on + strand at 672.072 kb on + strand at 672.082 kb on + strand at 672.149 kb on - strand, within b1396 at 672.185 kb on + strand, within b1396 at 672.193 kb on - strand, within b1396 at 672.230 kb on + strand, within b1396 at 672.231 kb on - strand, within b1396 at 672.231 kb on - strand, within b1396 at 672.231 kb on - strand, within b1396 at 672.272 kb on + strand, within b1396 at 672.336 kb on + strand, within b1396 at 672.416 kb on + strand, within b1396 at 672.422 kb on - strand, within b1396 at 672.435 kb on + strand, within b1396 at 672.522 kb on - strand at 672.760 kb on - strand at 673.491 kb on + strand, within DVU0603 at 673.509 kb on - strand, within DVU0603 at 673.613 kb on - strand, within DVU0603
Per-strain Table
Position Strand Gene LocusTag Fraction Pyruvate (fermenting) with Na2S as sulfur source with Casaminos 0.2% remove 671,680 + +1.3 671,688 - -1.0 671,704 - +0.2 671,735 + -1.3 671,738 - +0.4 671,870 + -1.2 671,994 + -0.2 672,072 + +0.2 672,072 + -0.7 672,082 + +0.5 672,149 - b1396 DVU0601 0.12 +0.1 672,185 + b1396 DVU0601 0.20 +0.1 672,193 - b1396 DVU0601 0.22 -0.6 672,230 + b1396 DVU0601 0.30 -0.0 672,231 - b1396 DVU0601 0.31 +0.6 672,231 - b1396 DVU0601 0.31 -0.6 672,231 - b1396 DVU0601 0.31 -0.3 672,272 + b1396 DVU0601 0.40 -0.4 672,336 + b1396 DVU0601 0.55 -0.2 672,416 + b1396 DVU0601 0.73 -0.2 672,422 - b1396 DVU0601 0.74 -0.9 672,435 + b1396 DVU0601 0.77 -1.0 672,522 - -0.0 672,760 - +1.6 673,491 + DVU0603 0.22 +0.2 673,509 - DVU0603 0.29 +0.7 673,613 - DVU0603 0.68 -0.1
Or see this region's nucleotide sequence