Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0561

Experiment: Pyruvate (fermenting) with Na2S as sulfur source with Casaminos 0.2%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDORF28817 and DVU0560 are separated by 172 nucleotidesDVU0560 and DVU0561 are separated by 37 nucleotidesDVU0561 and DVU0562 are separated by 112 nucleotidesDVU0562 and DVU0563 are separated by 20 nucleotides DORF28817: DORF28817 - no description, at 625,793 to 626,467 DORF28817 DVU0560: DVU0560 - conserved domain protein (TIGR), at 626,640 to 627,134 DVU0560 DVU0561: DVU0561 - glycosyl transferase, group 1 family protein (TIGR), at 627,172 to 628,275 DVU0561 DVU0562: DVU0562 - ISD1, transposase OrfA (TIGR), at 628,388 to 628,654 DVU0562 DVU0563: DVU0563 - ISD1, transposase OrfB (TIGR), at 628,675 to 629,499 DVU0563 Position (kb) 627 628 629Strain fitness (log2 ratio) -2 -1 0 1at 626.264 kb on + strand, within DORF28817at 626.312 kb on + strand, within DORF28817at 627.814 kb on - strand, within DVU0561at 627.867 kb on + strand, within DVU0561at 627.914 kb on - strand, within DVU0561at 628.011 kb on + strand, within DVU0561at 628.115 kb on + strand, within DVU0561at 628.123 kb on - strand, within DVU0561at 628.170 kb on + strandat 628.193 kb on + strandat 628.305 kb on + strandat 628.334 kb on - strandat 629.048 kb on + strand, within DVU0563

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate (fermenting) with Na2S as sulfur source with Casaminos 0.2%
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626,264 + DORF28817 0.70 -0.5
626,312 + DORF28817 0.77 +0.2
627,814 - DVU0561 0.58 -0.2
627,867 + DVU0561 0.63 -0.4
627,914 - DVU0561 0.67 -0.2
628,011 + DVU0561 0.76 -0.9
628,115 + DVU0561 0.85 -1.6
628,123 - DVU0561 0.86 -1.8
628,170 + +0.2
628,193 + -1.4
628,305 + -2.4
628,334 - -1.0
629,048 + DVU0563 0.45 -0.2

Or see this region's nucleotide sequence