Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0560

Experiment: Pyruvate (fermenting) with Na2S as sulfur source with Casaminos 0.2%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0557 and DORF28817 are separated by 66 nucleotidesDORF28817 and DVU0560 are separated by 172 nucleotidesDVU0560 and DVU0561 are separated by 37 nucleotides DVU0557: DVU0557 - ISDvu3, transposase OrfB, authentic point mutation (TIGR), at 624,872 to 625,726 DVU0557 DORF28817: DORF28817 - no description, at 625,793 to 626,467 DORF28817 DVU0560: DVU0560 - conserved domain protein (TIGR), at 626,640 to 627,134 DVU0560 DVU0561: DVU0561 - glycosyl transferase, group 1 family protein (TIGR), at 627,172 to 628,275 DVU0561 Position (kb) 626 627 628Strain fitness (log2 ratio) -2 -1 0 1at 625.804 kb on + strandat 626.264 kb on + strand, within DORF28817at 626.312 kb on + strand, within DORF28817at 627.814 kb on - strand, within DVU0561at 627.867 kb on + strand, within DVU0561at 627.914 kb on - strand, within DVU0561at 628.011 kb on + strand, within DVU0561at 628.115 kb on + strand, within DVU0561at 628.123 kb on - strand, within DVU0561

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate (fermenting) with Na2S as sulfur source with Casaminos 0.2%
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625,804 + +0.0
626,264 + DORF28817 0.70 -0.5
626,312 + DORF28817 0.77 +0.2
627,814 - DVU0561 0.58 -0.2
627,867 + DVU0561 0.63 -0.4
627,914 - DVU0561 0.67 -0.2
628,011 + DVU0561 0.76 -0.9
628,115 + DVU0561 0.85 -1.6
628,123 - DVU0561 0.86 -1.8

Or see this region's nucleotide sequence