Experiment: Pyruvate (fermenting) with Na2S as sulfur source with Casaminos 0.2%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0351 and lpsC are separated by 7 nucleotides lpsC and DVU0353 are separated by 133 nucleotides
DVU0351: DVU0351 - cytidine 5monophosphate N-acetylneuraminic acid synthetase, putative/polysaccharide biosynthesis protein (TIGR), at 397,873 to 399,507
DVU0351
DVU0352: lpsC - aminotransferase, DegT/DnrJ/EryC1/StrS family (TIGR), at 399,515 to 400,696
lpsC
DVU0353: DVU0353 - alcohol dehydrogenase, iron-containing (TIGR), at 400,830 to 401,903
DVU0353
Position (kb) 399
400
401 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 398.516 kb on + strand, within DVU0351 at 398.630 kb on + strand, within DVU0351 at 398.638 kb on - strand, within DVU0351 at 398.671 kb on + strand, within DVU0351 at 398.824 kb on - strand, within DVU0351 at 398.824 kb on - strand, within DVU0351 at 398.829 kb on - strand, within DVU0351 at 398.975 kb on - strand, within DVU0351 at 398.985 kb on - strand, within DVU0351 at 398.990 kb on - strand, within DVU0351 at 399.008 kb on + strand, within DVU0351 at 399.013 kb on + strand, within DVU0351 at 399.016 kb on - strand, within DVU0351 at 399.041 kb on - strand, within DVU0351 at 399.141 kb on + strand, within DVU0351 at 399.240 kb on - strand, within DVU0351 at 399.285 kb on + strand, within DVU0351 at 399.293 kb on - strand, within DVU0351 at 399.463 kb on + strand at 399.484 kb on - strand at 399.580 kb on + strand at 399.598 kb on - strand at 399.698 kb on + strand, within lpsC at 399.698 kb on + strand, within lpsC at 399.708 kb on + strand, within lpsC at 399.713 kb on + strand, within lpsC at 399.713 kb on + strand, within lpsC at 399.713 kb on + strand, within lpsC at 399.721 kb on - strand, within lpsC at 399.721 kb on - strand, within lpsC at 399.787 kb on + strand, within lpsC at 399.788 kb on - strand, within lpsC at 399.888 kb on - strand, within lpsC at 399.911 kb on - strand, within lpsC at 399.913 kb on + strand, within lpsC at 400.085 kb on - strand, within lpsC at 400.102 kb on - strand, within lpsC at 400.139 kb on - strand, within lpsC at 400.187 kb on - strand, within lpsC at 400.204 kb on - strand, within lpsC at 400.209 kb on + strand, within lpsC at 400.209 kb on + strand, within lpsC at 400.217 kb on - strand, within lpsC at 400.217 kb on - strand, within lpsC at 400.243 kb on + strand, within lpsC at 400.262 kb on + strand, within lpsC at 400.314 kb on - strand, within lpsC at 400.317 kb on + strand, within lpsC at 400.386 kb on - strand, within lpsC at 400.389 kb on + strand, within lpsC at 400.407 kb on - strand, within lpsC at 400.422 kb on + strand, within lpsC at 400.427 kb on + strand, within lpsC at 400.454 kb on + strand, within lpsC at 400.490 kb on - strand, within lpsC at 400.536 kb on - strand, within lpsC at 400.543 kb on - strand, within lpsC at 400.597 kb on + strand at 400.655 kb on + strand at 400.663 kb on - strand at 400.713 kb on - strand at 400.794 kb on - strand at 400.802 kb on - strand at 400.837 kb on + strand at 400.837 kb on + strand at 400.837 kb on + strand at 400.866 kb on + strand at 400.874 kb on - strand at 400.874 kb on - strand at 400.957 kb on + strand, within DVU0353 at 400.969 kb on + strand, within DVU0353 at 400.978 kb on + strand, within DVU0353 at 400.978 kb on + strand, within DVU0353 at 400.978 kb on + strand, within DVU0353 at 400.978 kb on + strand, within DVU0353 at 400.978 kb on + strand, within DVU0353 at 400.978 kb on + strand, within DVU0353 at 400.978 kb on + strand, within DVU0353 at 400.978 kb on + strand, within DVU0353 at 400.978 kb on + strand, within DVU0353 at 400.978 kb on + strand, within DVU0353 at 400.978 kb on + strand, within DVU0353 at 400.986 kb on - strand, within DVU0353 at 400.986 kb on - strand, within DVU0353 at 400.986 kb on - strand, within DVU0353 at 400.986 kb on - strand, within DVU0353 at 400.986 kb on - strand, within DVU0353 at 400.986 kb on - strand, within DVU0353 at 400.986 kb on - strand, within DVU0353 at 400.986 kb on - strand, within DVU0353 at 400.986 kb on - strand, within DVU0353 at 400.988 kb on + strand, within DVU0353 at 400.988 kb on + strand, within DVU0353 at 400.996 kb on - strand, within DVU0353 at 401.002 kb on + strand, within DVU0353 at 401.033 kb on + strand, within DVU0353 at 401.038 kb on + strand, within DVU0353 at 401.046 kb on - strand, within DVU0353 at 401.046 kb on - strand, within DVU0353 at 401.046 kb on - strand, within DVU0353 at 401.084 kb on + strand, within DVU0353 at 401.094 kb on + strand, within DVU0353 at 401.129 kb on - strand, within DVU0353 at 401.130 kb on + strand, within DVU0353 at 401.176 kb on + strand, within DVU0353 at 401.184 kb on - strand, within DVU0353 at 401.184 kb on - strand, within DVU0353 at 401.312 kb on + strand, within DVU0353 at 401.330 kb on - strand, within DVU0353 at 401.369 kb on + strand, within DVU0353 at 401.369 kb on + strand, within DVU0353 at 401.369 kb on + strand, within DVU0353 at 401.369 kb on + strand, within DVU0353 at 401.372 kb on - strand, within DVU0353 at 401.376 kb on + strand, within DVU0353 at 401.412 kb on + strand, within DVU0353 at 401.421 kb on - strand, within DVU0353 at 401.505 kb on + strand, within DVU0353 at 401.515 kb on + strand, within DVU0353 at 401.540 kb on - strand, within DVU0353 at 401.547 kb on + strand, within DVU0353 at 401.555 kb on - strand, within DVU0353 at 401.571 kb on - strand, within DVU0353 at 401.595 kb on - strand, within DVU0353 at 401.598 kb on + strand, within DVU0353 at 401.606 kb on - strand, within DVU0353 at 401.635 kb on - strand, within DVU0353
Per-strain Table
Position Strand Gene LocusTag Fraction Pyruvate (fermenting) with Na2S as sulfur source with Casaminos 0.2% remove 398,516 + DVU0351 0.39 -0.5 398,630 + DVU0351 0.46 -0.4 398,638 - DVU0351 0.47 -1.4 398,671 + DVU0351 0.49 -0.8 398,824 - DVU0351 0.58 -0.6 398,824 - DVU0351 0.58 -1.0 398,829 - DVU0351 0.58 -0.6 398,975 - DVU0351 0.67 +1.0 398,985 - DVU0351 0.68 +0.2 398,990 - DVU0351 0.68 -0.3 399,008 + DVU0351 0.69 -0.5 399,013 + DVU0351 0.70 -0.4 399,016 - DVU0351 0.70 -0.5 399,041 - DVU0351 0.71 -0.5 399,141 + DVU0351 0.78 -1.6 399,240 - DVU0351 0.84 -0.9 399,285 + DVU0351 0.86 -0.5 399,293 - DVU0351 0.87 -0.6 399,463 + -0.3 399,484 - -0.4 399,580 + +0.5 399,598 - -0.2 399,698 + lpsC DVU0352 0.15 -0.6 399,698 + lpsC DVU0352 0.15 -0.9 399,708 + lpsC DVU0352 0.16 +0.7 399,713 + lpsC DVU0352 0.17 -0.6 399,713 + lpsC DVU0352 0.17 -0.2 399,713 + lpsC DVU0352 0.17 +0.8 399,721 - lpsC DVU0352 0.17 -1.3 399,721 - lpsC DVU0352 0.17 -0.4 399,787 + lpsC DVU0352 0.23 -0.6 399,788 - lpsC DVU0352 0.23 -0.7 399,888 - lpsC DVU0352 0.32 -0.7 399,911 - lpsC DVU0352 0.34 -0.7 399,913 + lpsC DVU0352 0.34 -1.2 400,085 - lpsC DVU0352 0.48 -0.4 400,102 - lpsC DVU0352 0.50 -1.2 400,139 - lpsC DVU0352 0.53 -0.2 400,187 - lpsC DVU0352 0.57 -0.8 400,204 - lpsC DVU0352 0.58 -0.0 400,209 + lpsC DVU0352 0.59 -2.9 400,209 + lpsC DVU0352 0.59 -2.4 400,217 - lpsC DVU0352 0.59 -1.5 400,217 - lpsC DVU0352 0.59 -1.0 400,243 + lpsC DVU0352 0.62 +0.5 400,262 + lpsC DVU0352 0.63 -0.2 400,314 - lpsC DVU0352 0.68 -0.3 400,317 + lpsC DVU0352 0.68 -0.8 400,386 - lpsC DVU0352 0.74 -1.0 400,389 + lpsC DVU0352 0.74 -1.4 400,407 - lpsC DVU0352 0.75 -0.7 400,422 + lpsC DVU0352 0.77 -0.5 400,427 + lpsC DVU0352 0.77 -1.0 400,454 + lpsC DVU0352 0.79 -1.0 400,490 - lpsC DVU0352 0.82 -0.9 400,536 - lpsC DVU0352 0.86 -2.4 400,543 - lpsC DVU0352 0.87 -0.7 400,597 + -1.7 400,655 + -1.0 400,663 - -0.0 400,713 - -0.0 400,794 - -1.0 400,802 - +0.2 400,837 + -0.2 400,837 + -0.9 400,837 + -0.7 400,866 + -1.6 400,874 - -1.1 400,874 - -0.5 400,957 + DVU0353 0.12 -0.5 400,969 + DVU0353 0.13 -0.3 400,978 + DVU0353 0.14 -1.2 400,978 + DVU0353 0.14 -0.0 400,978 + DVU0353 0.14 -0.9 400,978 + DVU0353 0.14 -3.7 400,978 + DVU0353 0.14 -1.5 400,978 + DVU0353 0.14 -0.1 400,978 + DVU0353 0.14 -0.3 400,978 + DVU0353 0.14 -0.6 400,978 + DVU0353 0.14 +0.2 400,978 + DVU0353 0.14 -1.3 400,978 + DVU0353 0.14 -0.1 400,986 - DVU0353 0.15 -1.1 400,986 - DVU0353 0.15 -2.1 400,986 - DVU0353 0.15 -1.3 400,986 - DVU0353 0.15 -2.0 400,986 - DVU0353 0.15 -0.3 400,986 - DVU0353 0.15 -0.6 400,986 - DVU0353 0.15 -1.5 400,986 - DVU0353 0.15 -0.2 400,986 - DVU0353 0.15 -0.0 400,988 + DVU0353 0.15 +0.1 400,988 + DVU0353 0.15 -2.6 400,996 - DVU0353 0.15 -2.4 401,002 + DVU0353 0.16 -0.9 401,033 + DVU0353 0.19 -0.2 401,038 + DVU0353 0.19 -1.9 401,046 - DVU0353 0.20 -0.7 401,046 - DVU0353 0.20 -0.6 401,046 - DVU0353 0.20 -1.3 401,084 + DVU0353 0.24 -1.9 401,094 + DVU0353 0.25 -1.1 401,129 - DVU0353 0.28 -0.3 401,130 + DVU0353 0.28 -0.7 401,176 + DVU0353 0.32 -1.3 401,184 - DVU0353 0.33 -0.3 401,184 - DVU0353 0.33 -0.9 401,312 + DVU0353 0.45 -0.5 401,330 - DVU0353 0.47 -0.7 401,369 + DVU0353 0.50 -1.2 401,369 + DVU0353 0.50 -0.4 401,369 + DVU0353 0.50 -0.8 401,369 + DVU0353 0.50 -0.5 401,372 - DVU0353 0.50 -0.5 401,376 + DVU0353 0.51 -1.7 401,412 + DVU0353 0.54 -1.6 401,421 - DVU0353 0.55 -0.7 401,505 + DVU0353 0.63 -0.7 401,515 + DVU0353 0.64 -0.3 401,540 - DVU0353 0.66 -0.6 401,547 + DVU0353 0.67 -2.6 401,555 - DVU0353 0.68 -2.3 401,571 - DVU0353 0.69 -1.4 401,595 - DVU0353 0.71 -0.5 401,598 + DVU0353 0.72 -3.2 401,606 - DVU0353 0.72 -0.6 401,635 - DVU0353 0.75 +0.4
Or see this region's nucleotide sequence