Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2567

Experiment: Pyruvate (fermenting) with Na2S as sulfur source with Casaminos 0.2%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pyruvate (fermenting) with Na2S as sulfur source with Casaminos 0.2%
2,679,679	+	lysA-2	DVU2566	0.69	+1.3
2,679,687	-	lysA-2	DVU2566	0.69	+1.7
2,679,735	+	lysA-2	DVU2566	0.73	+1.1
2,679,743	-	lysA-2	DVU2566	0.74	+0.4
2,679,832	+	lysA-2	DVU2566	0.81	-0.1
2,679,862	+	lysA-2	DVU2566	0.83	-1.8
2,679,862	+	lysA-2	DVU2566	0.83	+0.2
2,679,992	-				+0.4
2,679,993	+				+0.2
2,680,074	-				-0.1
2,680,126	+				-0.3
2,680,143	+				+0.3
2,680,223	+	lysX	DVU2567	0.21	+0.7
2,680,563	-	lysX	DVU2567	0.69	-2.0
2,680,606	-	lysX	DVU2567	0.75	+1.6
2,680,697	+	lysX	DVU2567	0.88	-1.1
2,680,698	+	lysX	DVU2567	0.88	-0.1
2,680,719	+				-0.3
2,680,794	+				+0.3
2,680,795	-				-0.3
2,680,838	+				+0.1
2,680,849	+				-0.4
2,680,870	+				-0.3
2,680,880	+				-1.6
2,680,880	+				+1.1
2,680,880	+				-0.2
2,680,880	+				-0.2
2,680,888	-				+0.2
2,681,094	+				-0.3
2,681,123	+				-0.4
2,681,131	-				-0.2
2,681,131	-				-0.5
2,681,247	+				-0.0
2,681,261	+				+0.1
2,681,314	-				-2.4
2,681,316	+				-1.0
2,681,345	+				-0.1
2,681,400	+				+0.2
2,681,400	+				-0.1
2,681,434	+				-0.8
2,681,434	+				+1.0
2,681,442	-				-0.5
2,681,442	-				-0.5
2,681,442	-				-2.0
2,681,442	-				+0.0
2,681,442	-				-1.1
2,681,474	-				+0.2
2,681,488	-				+0.8
2,681,734	-	cpsA	DVU2568	0.29	-0.2
2,681,757	-	cpsA	DVU2568	0.30	-1.1
2,681,776	+	cpsA	DVU2568	0.32	+0.1