Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0750

Experiment: Pyruvate (fermenting) with Na2S as sulfur source with Casaminos 0.2%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0749 and DVU0750 are separated by 290 nucleotidesDVU0750 and DVU0751 are separated by 395 nucleotides DVU0749: DVU0749 - DNA-binding response regulator (TIGR), at 839,102 to 840,031 DVU0749 DVU0750: DVU0750 - methyl-accepting chemotaxis protein (TIGR), at 840,322 to 842,331 DVU0750 DVU0751: DVU0751 - amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family (TIGR), at 842,727 to 844,517 DVU0751 Position (kb) 840 841 842 843Strain fitness (log2 ratio) -3 -2 -1 0 1at 839.396 kb on - strand, within DVU0749at 839.465 kb on - strand, within DVU0749at 839.469 kb on + strand, within DVU0749at 839.469 kb on + strand, within DVU0749at 839.469 kb on + strand, within DVU0749at 839.487 kb on - strand, within DVU0749at 839.487 kb on - strand, within DVU0749at 839.521 kb on + strand, within DVU0749at 839.543 kb on + strand, within DVU0749at 839.543 kb on + strand, within DVU0749at 839.680 kb on + strand, within DVU0749at 839.681 kb on + strand, within DVU0749at 839.861 kb on - strand, within DVU0749at 839.885 kb on + strand, within DVU0749at 839.885 kb on + strand, within DVU0749at 839.905 kb on - strand, within DVU0749at 839.912 kb on - strand, within DVU0749at 839.932 kb on + strand, within DVU0749at 839.989 kb on + strandat 840.084 kb on + strandat 840.272 kb on - strandat 840.302 kb on - strandat 840.411 kb on - strandat 840.507 kb on - strandat 840.587 kb on + strand, within DVU0750at 840.629 kb on - strand, within DVU0750at 840.629 kb on - strand, within DVU0750at 840.638 kb on + strand, within DVU0750at 840.638 kb on + strand, within DVU0750at 840.645 kb on + strand, within DVU0750at 840.648 kb on + strand, within DVU0750at 840.666 kb on - strand, within DVU0750at 840.666 kb on - strand, within DVU0750at 840.736 kb on + strand, within DVU0750at 840.744 kb on - strand, within DVU0750at 840.744 kb on - strand, within DVU0750at 840.842 kb on + strand, within DVU0750at 840.866 kb on + strand, within DVU0750at 841.032 kb on - strand, within DVU0750at 841.068 kb on - strand, within DVU0750at 841.127 kb on - strand, within DVU0750at 841.243 kb on + strand, within DVU0750at 841.301 kb on + strand, within DVU0750at 841.358 kb on + strand, within DVU0750at 841.358 kb on + strand, within DVU0750at 841.366 kb on - strand, within DVU0750at 841.366 kb on - strand, within DVU0750at 841.366 kb on - strand, within DVU0750at 841.366 kb on - strand, within DVU0750at 841.366 kb on - strand, within DVU0750at 841.478 kb on - strand, within DVU0750at 841.540 kb on + strand, within DVU0750at 841.540 kb on + strand, within DVU0750at 841.540 kb on + strand, within DVU0750at 841.610 kb on + strand, within DVU0750at 841.652 kb on - strand, within DVU0750at 841.657 kb on + strand, within DVU0750at 841.665 kb on - strand, within DVU0750at 841.700 kb on + strand, within DVU0750at 841.710 kb on + strand, within DVU0750at 841.721 kb on + strand, within DVU0750at 841.786 kb on + strand, within DVU0750at 841.795 kb on + strand, within DVU0750at 841.941 kb on + strand, within DVU0750at 842.009 kb on - strand, within DVU0750at 842.027 kb on + strand, within DVU0750at 842.250 kb on + strandat 842.256 kb on + strandat 842.314 kb on - strandat 842.316 kb on + strandat 842.316 kb on + strandat 842.333 kb on - strandat 842.345 kb on + strandat 842.369 kb on + strandat 842.470 kb on - strandat 842.593 kb on + strandat 842.779 kb on + strandat 842.797 kb on - strandat 842.853 kb on - strandat 842.874 kb on - strandat 842.898 kb on - strandat 842.980 kb on - strand, within DVU0751at 843.006 kb on + strand, within DVU0751at 843.014 kb on - strand, within DVU0751at 843.048 kb on - strand, within DVU0751at 843.105 kb on + strand, within DVU0751at 843.113 kb on + strand, within DVU0751at 843.162 kb on - strand, within DVU0751at 843.229 kb on + strand, within DVU0751at 843.237 kb on - strand, within DVU0751at 843.271 kb on - strand, within DVU0751at 843.271 kb on - strand, within DVU0751

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate (fermenting) with Na2S as sulfur source with Casaminos 0.2%
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839,396 - DVU0749 0.32 -1.4
839,465 - DVU0749 0.39 -0.5
839,469 + DVU0749 0.39 -0.1
839,469 + DVU0749 0.39 -0.1
839,469 + DVU0749 0.39 +0.0
839,487 - DVU0749 0.41 -0.7
839,487 - DVU0749 0.41 -0.4
839,521 + DVU0749 0.45 +0.5
839,543 + DVU0749 0.47 -0.1
839,543 + DVU0749 0.47 +0.5
839,680 + DVU0749 0.62 +0.3
839,681 + DVU0749 0.62 +0.1
839,861 - DVU0749 0.82 +0.9
839,885 + DVU0749 0.84 -0.3
839,885 + DVU0749 0.84 -0.6
839,905 - DVU0749 0.86 +0.2
839,912 - DVU0749 0.87 +0.3
839,932 + DVU0749 0.89 +0.8
839,989 + +1.6
840,084 + -0.5
840,272 - -0.2
840,302 - -0.2
840,411 - +1.2
840,507 - -0.1
840,587 + DVU0750 0.13 +0.2
840,629 - DVU0750 0.15 -0.1
840,629 - DVU0750 0.15 +0.7
840,638 + DVU0750 0.16 -0.2
840,638 + DVU0750 0.16 -0.8
840,645 + DVU0750 0.16 -0.2
840,648 + DVU0750 0.16 +0.0
840,666 - DVU0750 0.17 -0.0
840,666 - DVU0750 0.17 -1.5
840,736 + DVU0750 0.21 -0.9
840,744 - DVU0750 0.21 -0.4
840,744 - DVU0750 0.21 +1.4
840,842 + DVU0750 0.26 +0.0
840,866 + DVU0750 0.27 -0.1
841,032 - DVU0750 0.35 -1.2
841,068 - DVU0750 0.37 -0.4
841,127 - DVU0750 0.40 -1.7
841,243 + DVU0750 0.46 -0.4
841,301 + DVU0750 0.49 +0.0
841,358 + DVU0750 0.52 -0.5
841,358 + DVU0750 0.52 +0.7
841,366 - DVU0750 0.52 -0.2
841,366 - DVU0750 0.52 -1.9
841,366 - DVU0750 0.52 -2.0
841,366 - DVU0750 0.52 -0.3
841,366 - DVU0750 0.52 -0.1
841,478 - DVU0750 0.58 -0.0
841,540 + DVU0750 0.61 -0.8
841,540 + DVU0750 0.61 -0.8
841,540 + DVU0750 0.61 -1.7
841,610 + DVU0750 0.64 -0.6
841,652 - DVU0750 0.66 +0.7
841,657 + DVU0750 0.66 -0.1
841,665 - DVU0750 0.67 -0.6
841,700 + DVU0750 0.69 -0.3
841,710 + DVU0750 0.69 -0.8
841,721 + DVU0750 0.70 -0.0
841,786 + DVU0750 0.73 -0.3
841,795 + DVU0750 0.73 -0.3
841,941 + DVU0750 0.81 -3.7
842,009 - DVU0750 0.84 +1.2
842,027 + DVU0750 0.85 -0.6
842,250 + -0.3
842,256 + +1.0
842,314 - +0.7
842,316 + -0.0
842,316 + -0.1
842,333 - +0.0
842,345 + -0.4
842,369 + -0.3
842,470 - -0.2
842,593 + +0.3
842,779 + -0.1
842,797 - +0.2
842,853 - -0.1
842,874 - +0.4
842,898 - -2.4
842,980 - DVU0751 0.14 -0.3
843,006 + DVU0751 0.16 -0.3
843,014 - DVU0751 0.16 -1.1
843,048 - DVU0751 0.18 -0.7
843,105 + DVU0751 0.21 +0.4
843,113 + DVU0751 0.22 +0.1
843,162 - DVU0751 0.24 +1.5
843,229 + DVU0751 0.28 -0.3
843,237 - DVU0751 0.28 -0.8
843,271 - DVU0751 0.30 -1.1
843,271 - DVU0751 0.30 +0.2

Or see this region's nucleotide sequence