Experiment: D-Mannitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc04131 and SMc04130 are separated by 17 nucleotides SMc04130 and SMc04129 are separated by 54 nucleotides
SMc04131: SMc04131 - hypothetical protein, at 141,146 to 142,561
SMc04131
SMc04130: SMc04130 - hypothetical protein, at 142,579 to 143,403
SMc04130
SMc04129: SMc04129 - oxidoreductase, at 143,458 to 144,759
SMc04129
Position (kb) 142
143
144 Strain fitness (log2 ratio) -2
-1
0
1
2 at 141.747 kb on + strand, within SMc04131 at 141.809 kb on + strand, within SMc04131 at 141.911 kb on + strand, within SMc04131 at 141.911 kb on + strand, within SMc04131 at 141.911 kb on + strand, within SMc04131 at 141.912 kb on - strand, within SMc04131 at 141.912 kb on - strand, within SMc04131 at 141.913 kb on + strand, within SMc04131 at 141.914 kb on - strand, within SMc04131 at 141.914 kb on - strand, within SMc04131 at 142.367 kb on + strand, within SMc04131 at 142.367 kb on + strand, within SMc04131 at 142.437 kb on - strand at 142.554 kb on + strand at 142.578 kb on + strand at 142.578 kb on + strand at 142.578 kb on + strand at 142.578 kb on + strand at 142.578 kb on + strand at 142.579 kb on - strand at 142.579 kb on - strand at 142.579 kb on - strand at 142.650 kb on + strand at 142.650 kb on + strand at 142.651 kb on - strand at 142.651 kb on - strand at 142.651 kb on - strand at 142.651 kb on - strand at 143.017 kb on + strand, within SMc04130 at 143.017 kb on + strand, within SMc04130 at 143.018 kb on - strand, within SMc04130 at 143.018 kb on - strand, within SMc04130 at 143.018 kb on - strand, within SMc04130 at 143.018 kb on - strand, within SMc04130 at 143.018 kb on - strand, within SMc04130 at 143.110 kb on + strand, within SMc04130 at 143.110 kb on + strand, within SMc04130 at 143.111 kb on - strand, within SMc04130 at 143.404 kb on + strand at 143.404 kb on + strand at 143.404 kb on + strand at 143.405 kb on - strand at 143.405 kb on - strand at 143.429 kb on - strand at 143.429 kb on - strand at 143.429 kb on - strand at 143.429 kb on - strand at 143.435 kb on + strand at 143.435 kb on + strand at 143.436 kb on - strand at 143.436 kb on - strand at 143.436 kb on - strand at 143.458 kb on - strand at 143.458 kb on - strand at 143.635 kb on + strand, within SMc04129 at 143.716 kb on - strand, within SMc04129 at 143.849 kb on - strand, within SMc04129 at 143.849 kb on - strand, within SMc04129 at 143.849 kb on - strand, within SMc04129 at 143.849 kb on - strand, within SMc04129 at 143.935 kb on + strand, within SMc04129 at 143.936 kb on - strand, within SMc04129 at 143.963 kb on - strand, within SMc04129 at 143.983 kb on + strand, within SMc04129 at 144.100 kb on + strand, within SMc04129 at 144.100 kb on + strand, within SMc04129 at 144.101 kb on - strand, within SMc04129 at 144.101 kb on - strand, within SMc04129 at 144.101 kb on - strand, within SMc04129 at 144.101 kb on - strand, within SMc04129 at 144.169 kb on + strand, within SMc04129 at 144.169 kb on + strand, within SMc04129 at 144.208 kb on + strand, within SMc04129 at 144.209 kb on - strand, within SMc04129 at 144.235 kb on + strand, within SMc04129 at 144.236 kb on - strand, within SMc04129 at 144.328 kb on + strand, within SMc04129 at 144.328 kb on + strand, within SMc04129 at 144.340 kb on - strand, within SMc04129 at 144.340 kb on - strand, within SMc04129 at 144.381 kb on + strand, within SMc04129
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannitol (C) remove 141,747 + SMc04131 0.42 -0.7 141,809 + SMc04131 0.47 -0.5 141,911 + SMc04131 0.54 +1.4 141,911 + SMc04131 0.54 +0.5 141,911 + SMc04131 0.54 -0.5 141,912 - SMc04131 0.54 -0.4 141,912 - SMc04131 0.54 -1.5 141,913 + SMc04131 0.54 +1.3 141,914 - SMc04131 0.54 +0.3 141,914 - SMc04131 0.54 -0.2 142,367 + SMc04131 0.86 -0.9 142,367 + SMc04131 0.86 -1.0 142,437 - +0.2 142,554 + -0.5 142,578 + -0.0 142,578 + -0.4 142,578 + +1.3 142,578 + +0.4 142,578 + -0.9 142,579 - +0.7 142,579 - -0.1 142,579 - -0.1 142,650 + +0.5 142,650 + +1.2 142,651 - -0.1 142,651 - +1.9 142,651 - -0.1 142,651 - +0.0 143,017 + SMc04130 0.53 +0.2 143,017 + SMc04130 0.53 +0.6 143,018 - SMc04130 0.53 +1.5 143,018 - SMc04130 0.53 -0.0 143,018 - SMc04130 0.53 +0.1 143,018 - SMc04130 0.53 +0.9 143,018 - SMc04130 0.53 +0.0 143,110 + SMc04130 0.64 +1.0 143,110 + SMc04130 0.64 +0.4 143,111 - SMc04130 0.64 +0.3 143,404 + +0.7 143,404 + -0.4 143,404 + +0.4 143,405 - -0.6 143,405 - +0.2 143,429 - +0.3 143,429 - +0.6 143,429 - -0.6 143,429 - -1.1 143,435 + +0.8 143,435 + -0.5 143,436 - +0.4 143,436 - -1.1 143,436 - -0.1 143,458 - +0.1 143,458 - -0.0 143,635 + SMc04129 0.14 -0.6 143,716 - SMc04129 0.20 -1.4 143,849 - SMc04129 0.30 -0.1 143,849 - SMc04129 0.30 -0.3 143,849 - SMc04129 0.30 +0.3 143,849 - SMc04129 0.30 +0.3 143,935 + SMc04129 0.37 +0.5 143,936 - SMc04129 0.37 -2.7 143,963 - SMc04129 0.39 -0.7 143,983 + SMc04129 0.40 -0.1 144,100 + SMc04129 0.49 -0.2 144,100 + SMc04129 0.49 +0.4 144,101 - SMc04129 0.49 +0.6 144,101 - SMc04129 0.49 +0.3 144,101 - SMc04129 0.49 +0.2 144,101 - SMc04129 0.49 -0.0 144,169 + SMc04129 0.55 -0.3 144,169 + SMc04129 0.55 +0.5 144,208 + SMc04129 0.58 -0.2 144,209 - SMc04129 0.58 -0.1 144,235 + SMc04129 0.60 -0.3 144,236 - SMc04129 0.60 -0.1 144,328 + SMc04129 0.67 +0.0 144,328 + SMc04129 0.67 +0.3 144,340 - SMc04129 0.68 -0.0 144,340 - SMc04129 0.68 -0.5 144,381 + SMc04129 0.71 +0.9
Or see this region's nucleotide sequence