Experiment: D-Mannitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa2135 and SMa2137 are separated by 71 nucleotides SMa2137 and SMa2139 overlap by 4 nucleotides
SMa2135: SMa2135 - GlyA2 serine hydroxymethyltransferase, SHMT, at 1,206,555 to 1,207,823
SMa2135
SMa2137: SMa2137 - dehydrogenase, at 1,207,895 to 1,208,869
SMa2137
SMa2139: SMa2139 - SgaA serine-glyoxylate aminotransferase (SGAT), at 1,208,866 to 1,210,071
SMa2139
Position (kb) 1207
1208
1209 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1206.908 kb on - strand, within SMa2135 at 1206.968 kb on - strand, within SMa2135 at 1206.968 kb on - strand, within SMa2135 at 1207.084 kb on - strand, within SMa2135 at 1207.110 kb on - strand, within SMa2135 at 1207.332 kb on + strand, within SMa2135 at 1207.341 kb on + strand, within SMa2135 at 1207.390 kb on + strand, within SMa2135 at 1207.615 kb on + strand, within SMa2135 at 1207.615 kb on + strand, within SMa2135 at 1207.616 kb on - strand, within SMa2135 at 1207.631 kb on - strand, within SMa2135 at 1207.631 kb on - strand, within SMa2135 at 1207.634 kb on - strand, within SMa2135 at 1207.660 kb on + strand, within SMa2135 at 1207.710 kb on + strand at 1207.710 kb on + strand at 1207.710 kb on + strand at 1207.711 kb on - strand at 1207.711 kb on - strand at 1207.711 kb on - strand at 1207.887 kb on - strand at 1208.088 kb on - strand, within SMa2137 at 1208.149 kb on + strand, within SMa2137 at 1208.150 kb on - strand, within SMa2137 at 1208.155 kb on + strand, within SMa2137 at 1208.155 kb on + strand, within SMa2137 at 1208.156 kb on - strand, within SMa2137 at 1208.311 kb on + strand, within SMa2137 at 1208.312 kb on - strand, within SMa2137 at 1208.312 kb on - strand, within SMa2137 at 1208.612 kb on - strand, within SMa2137 at 1208.612 kb on - strand, within SMa2137 at 1208.751 kb on + strand, within SMa2137 at 1208.831 kb on + strand at 1208.831 kb on + strand at 1208.831 kb on + strand at 1209.098 kb on + strand, within SMa2139 at 1209.107 kb on + strand, within SMa2139 at 1209.136 kb on + strand, within SMa2139 at 1209.136 kb on + strand, within SMa2139 at 1209.137 kb on - strand, within SMa2139 at 1209.137 kb on - strand, within SMa2139 at 1209.137 kb on - strand, within SMa2139 at 1209.322 kb on + strand, within SMa2139 at 1209.339 kb on + strand, within SMa2139 at 1209.339 kb on + strand, within SMa2139 at 1209.339 kb on + strand, within SMa2139 at 1209.342 kb on - strand, within SMa2139 at 1209.376 kb on - strand, within SMa2139 at 1209.476 kb on - strand, within SMa2139
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannitol (C) remove 1,206,908 - SMa2135 0.28 +1.9 1,206,968 - SMa2135 0.33 -0.6 1,206,968 - SMa2135 0.33 -2.2 1,207,084 - SMa2135 0.42 +0.1 1,207,110 - SMa2135 0.44 -1.4 1,207,332 + SMa2135 0.61 -0.2 1,207,341 + SMa2135 0.62 -0.7 1,207,390 + SMa2135 0.66 -0.1 1,207,615 + SMa2135 0.84 -0.8 1,207,615 + SMa2135 0.84 +0.2 1,207,616 - SMa2135 0.84 +0.3 1,207,631 - SMa2135 0.85 -0.9 1,207,631 - SMa2135 0.85 -0.2 1,207,634 - SMa2135 0.85 +0.3 1,207,660 + SMa2135 0.87 +0.7 1,207,710 + -0.2 1,207,710 + -0.9 1,207,710 + +0.6 1,207,711 - +0.2 1,207,711 - +0.0 1,207,711 - +0.1 1,207,887 - +0.0 1,208,088 - SMa2137 0.20 +0.3 1,208,149 + SMa2137 0.26 -1.0 1,208,150 - SMa2137 0.26 -0.7 1,208,155 + SMa2137 0.27 -0.6 1,208,155 + SMa2137 0.27 -0.4 1,208,156 - SMa2137 0.27 -0.9 1,208,311 + SMa2137 0.43 +1.7 1,208,312 - SMa2137 0.43 -0.4 1,208,312 - SMa2137 0.43 -0.7 1,208,612 - SMa2137 0.74 +1.1 1,208,612 - SMa2137 0.74 -0.4 1,208,751 + SMa2137 0.88 -0.6 1,208,831 + +0.9 1,208,831 + -0.9 1,208,831 + -0.5 1,209,098 + SMa2139 0.19 -0.7 1,209,107 + SMa2139 0.20 +1.7 1,209,136 + SMa2139 0.22 +0.1 1,209,136 + SMa2139 0.22 -0.4 1,209,137 - SMa2139 0.22 +0.9 1,209,137 - SMa2139 0.22 +0.1 1,209,137 - SMa2139 0.22 -0.4 1,209,322 + SMa2139 0.38 +0.3 1,209,339 + SMa2139 0.39 -0.7 1,209,339 + SMa2139 0.39 -0.5 1,209,339 + SMa2139 0.39 -0.1 1,209,342 - SMa2139 0.39 -2.9 1,209,376 - SMa2139 0.42 +0.9 1,209,476 - SMa2139 0.51 +0.0
Or see this region's nucleotide sequence