Experiment: D-Mannitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0347 and SMa0349 are separated by 308 nucleotides SMa0349 and SMa0352 are separated by 35 nucleotides SMa0352 and SMa0353 are separated by 102 nucleotides
SMa0347: SMa0347 - LysR family transcriptional regulator, at 188,006 to 188,893
SMa0347
SMa0349: SMa0349 - hypothetical protein, at 189,202 to 189,798
SMa0349
SMa0352: SMa0352 - hypothetical protein, at 189,834 to 190,730
SMa0352
SMa0353: SMa0353 - LysR family transcriptional regulator, at 190,833 to 191,747
SMa0353
Position (kb) 189
190
191 Strain fitness (log2 ratio) -2
-1
0
1
2 at 188.871 kb on + strand at 188.871 kb on + strand at 188.872 kb on - strand at 188.902 kb on + strand at 188.903 kb on - strand at 189.029 kb on + strand at 189.029 kb on + strand at 189.029 kb on + strand at 189.030 kb on - strand at 189.093 kb on - strand at 189.106 kb on + strand at 189.197 kb on + strand at 189.252 kb on + strand at 189.472 kb on - strand, within SMa0349 at 189.570 kb on + strand, within SMa0349 at 189.594 kb on - strand, within SMa0349 at 190.025 kb on + strand, within SMa0352 at 190.262 kb on + strand, within SMa0352 at 190.263 kb on - strand, within SMa0352 at 190.263 kb on - strand at 190.263 kb on - strand, within SMa0352 at 190.474 kb on + strand, within SMa0352 at 190.475 kb on - strand, within SMa0352 at 190.516 kb on + strand, within SMa0352 at 190.517 kb on - strand, within SMa0352 at 190.517 kb on - strand, within SMa0352 at 190.517 kb on - strand, within SMa0352 at 190.770 kb on + strand at 190.771 kb on - strand at 190.950 kb on + strand, within SMa0353 at 191.119 kb on + strand, within SMa0353 at 191.120 kb on - strand, within SMa0353 at 191.224 kb on + strand, within SMa0353 at 191.224 kb on + strand, within SMa0353 at 191.225 kb on - strand, within SMa0353 at 191.225 kb on - strand, within SMa0353 at 191.225 kb on - strand, within SMa0353 at 191.225 kb on - strand, within SMa0353 at 191.225 kb on - strand, within SMa0353 at 191.225 kb on - strand, within SMa0353 at 191.226 kb on + strand, within SMa0353 at 191.226 kb on + strand, within SMa0353 at 191.226 kb on + strand, within SMa0353 at 191.227 kb on - strand, within SMa0353 at 191.227 kb on - strand, within SMa0353 at 191.227 kb on - strand, within SMa0353 at 191.277 kb on - strand, within SMa0353 at 191.328 kb on - strand, within SMa0353 at 191.328 kb on - strand, within SMa0353 at 191.421 kb on - strand, within SMa0353 at 191.421 kb on - strand, within SMa0353 at 191.489 kb on + strand, within SMa0353 at 191.489 kb on + strand, within SMa0353 at 191.489 kb on + strand, within SMa0353 at 191.490 kb on - strand, within SMa0353 at 191.490 kb on - strand, within SMa0353 at 191.490 kb on - strand, within SMa0353 at 191.490 kb on - strand, within SMa0353 at 191.490 kb on - strand, within SMa0353 at 191.490 kb on - strand, within SMa0353 at 191.490 kb on - strand, within SMa0353 at 191.656 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannitol (C) remove 188,871 + -2.0 188,871 + +1.3 188,872 - +1.3 188,902 + +0.6 188,903 - -2.2 189,029 + +0.2 189,029 + -0.3 189,029 + -0.4 189,030 - -0.6 189,093 - -0.2 189,106 + +0.8 189,197 + -1.4 189,252 + +1.1 189,472 - SMa0349 0.45 +0.1 189,570 + SMa0349 0.62 +0.9 189,594 - SMa0349 0.66 -0.2 190,025 + SMa0352 0.21 -0.3 190,262 + SMa0352 0.48 -0.5 190,263 - SMa0352 0.48 -1.9 190,263 - +0.8 190,263 - SMa0352 0.48 -0.7 190,474 + SMa0352 0.71 -0.2 190,475 - SMa0352 0.71 -0.3 190,516 + SMa0352 0.76 -0.6 190,517 - SMa0352 0.76 +0.4 190,517 - SMa0352 0.76 -0.8 190,517 - SMa0352 0.76 +0.3 190,770 + -0.0 190,771 - +1.8 190,950 + SMa0353 0.13 -0.9 191,119 + SMa0353 0.31 +2.4 191,120 - SMa0353 0.31 +1.3 191,224 + SMa0353 0.43 -0.2 191,224 + SMa0353 0.43 -0.0 191,225 - SMa0353 0.43 +0.4 191,225 - SMa0353 0.43 +0.3 191,225 - SMa0353 0.43 -0.6 191,225 - SMa0353 0.43 -0.6 191,225 - SMa0353 0.43 -0.1 191,225 - SMa0353 0.43 -0.3 191,226 + SMa0353 0.43 +0.8 191,226 + SMa0353 0.43 +0.0 191,226 + SMa0353 0.43 -0.5 191,227 - SMa0353 0.43 -0.2 191,227 - SMa0353 0.43 -0.0 191,227 - SMa0353 0.43 +0.6 191,277 - SMa0353 0.49 -1.0 191,328 - SMa0353 0.54 -0.7 191,328 - SMa0353 0.54 -0.4 191,421 - SMa0353 0.64 +0.2 191,421 - SMa0353 0.64 -1.6 191,489 + SMa0353 0.72 +0.1 191,489 + SMa0353 0.72 +0.8 191,489 + SMa0353 0.72 +0.3 191,490 - SMa0353 0.72 +0.8 191,490 - SMa0353 0.72 -0.3 191,490 - SMa0353 0.72 +0.1 191,490 - SMa0353 0.72 +0.2 191,490 - SMa0353 0.72 +1.0 191,490 - SMa0353 0.72 -0.5 191,490 - SMa0353 0.72 -0.3 191,656 - +0.6
Or see this region's nucleotide sequence