Strain Fitness in Sinorhizobium meliloti 1021 around SMa0235

Experiment: D-Mannitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa0233 and SMa0235 are separated by 414 nucleotidesSMa0235 and SMa0237 are separated by 8 nucleotidesSMa0237 and SMa0241 overlap by 4 nucleotides SMa0233: SMa0233 - OtsA trehalose-6-phosphate synthase, at 129,300 to 130,691 SMa0233 SMa0235: SMa0235 - dihydroxy-acid dehydratase, at 131,106 to 132,884 SMa0235 SMa0237: SMa0237 - dehydrogenase, at 132,893 to 133,774 SMa0237 SMa0241: SMa0241 - epimerase, at 133,771 to 134,754 SMa0241 Position (kb) 131 132 133Strain fitness (log2 ratio) -1 0 1at 130.144 kb on + strand, within SMa0233at 130.194 kb on + strand, within SMa0233at 130.289 kb on - strand, within SMa0233at 130.453 kb on + strand, within SMa0233at 130.495 kb on + strand, within SMa0233at 130.495 kb on + strand, within SMa0233at 130.496 kb on - strand, within SMa0233at 130.502 kb on + strand, within SMa0233at 130.718 kb on - strandat 131.019 kb on + strandat 131.020 kb on - strandat 131.108 kb on - strandat 131.108 kb on - strandat 131.127 kb on - strandat 131.591 kb on - strand, within SMa0235at 131.660 kb on - strand, within SMa0235at 131.778 kb on - strand, within SMa0235at 131.929 kb on + strand, within SMa0235at 132.170 kb on - strand, within SMa0235at 132.535 kb on + strand, within SMa0235at 132.565 kb on + strand, within SMa0235at 132.692 kb on + strand, within SMa0235at 132.692 kb on + strand, within SMa0235at 132.692 kb on + strand, within SMa0235at 132.693 kb on - strand, within SMa0235at 132.805 kb on + strandat 132.806 kb on - strandat 132.825 kb on - strandat 132.825 kb on - strandat 133.375 kb on + strand, within SMa0237at 133.504 kb on + strand, within SMa0237at 133.504 kb on + strand, within SMa0237at 133.504 kb on + strand, within SMa0237at 133.504 kb on + strand, within SMa0237at 133.505 kb on - strand, within SMa0237at 133.505 kb on - strand, within SMa0237at 133.519 kb on + strand, within SMa0237at 133.589 kb on - strand, within SMa0237at 133.685 kb on - strand, within SMa0237

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannitol (C)
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130,144 + SMa0233 0.61 -0.2
130,194 + SMa0233 0.64 +0.7
130,289 - SMa0233 0.71 -0.3
130,453 + SMa0233 0.83 -1.6
130,495 + SMa0233 0.86 +0.5
130,495 + SMa0233 0.86 +0.2
130,496 - SMa0233 0.86 +0.4
130,502 + SMa0233 0.86 -0.2
130,718 - +0.2
131,019 + -0.1
131,020 - -0.4
131,108 - -0.2
131,108 - +1.2
131,127 - +1.1
131,591 - SMa0235 0.27 -0.6
131,660 - SMa0235 0.31 +1.0
131,778 - SMa0235 0.38 -0.3
131,929 + SMa0235 0.46 +0.7
132,170 - SMa0235 0.60 +0.1
132,535 + SMa0235 0.80 -0.0
132,565 + SMa0235 0.82 -0.8
132,692 + SMa0235 0.89 -0.7
132,692 + SMa0235 0.89 +0.1
132,692 + SMa0235 0.89 +0.0
132,693 - SMa0235 0.89 +0.0
132,805 + +0.3
132,806 - -0.7
132,825 - -0.8
132,825 - +0.3
133,375 + SMa0237 0.55 -0.8
133,504 + SMa0237 0.69 +0.4
133,504 + SMa0237 0.69 -0.2
133,504 + SMa0237 0.69 -0.1
133,504 + SMa0237 0.69 -0.3
133,505 - SMa0237 0.69 -0.1
133,505 - SMa0237 0.69 +1.6
133,519 + SMa0237 0.71 -0.2
133,589 - SMa0237 0.79 +1.1
133,685 - SMa0237 0.90 +0.4

Or see this region's nucleotide sequence