Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20584

Experiment: D-Mannitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20583 and SM_b20584 are separated by 172 nucleotidesSM_b20584 and SM_b20585 are separated by 209 nucleotides SM_b20583: SM_b20583 - 4-hydroxybenzoate 3-monooxygenase, at 1,597,367 to 1,598,539 _b20583 SM_b20584: SM_b20584 - hypothetical protein, at 1,598,712 to 1,599,374 _b20584 SM_b20585: SM_b20585 - gamma-glutamyltranspeptidase, at 1,599,584 to 1,601,329 _b20585 Position (kb) 1598 1599 1600Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1597.875 kb on + strand, within SM_b20583at 1597.875 kb on + strand, within SM_b20583at 1597.875 kb on + strand, within SM_b20583at 1597.876 kb on - strand, within SM_b20583at 1597.876 kb on - strand, within SM_b20583at 1597.878 kb on + strand, within SM_b20583at 1597.879 kb on - strand, within SM_b20583at 1597.938 kb on + strand, within SM_b20583at 1597.939 kb on - strand, within SM_b20583at 1597.939 kb on - strand, within SM_b20583at 1597.939 kb on - strand, within SM_b20583at 1598.241 kb on + strand, within SM_b20583at 1598.241 kb on + strand, within SM_b20583at 1598.241 kb on + strand, within SM_b20583at 1598.242 kb on - strand, within SM_b20583at 1598.452 kb on + strandat 1598.453 kb on - strandat 1598.453 kb on - strandat 1598.609 kb on + strandat 1598.614 kb on + strandat 1598.615 kb on - strandat 1598.637 kb on - strandat 1599.022 kb on - strand, within SM_b20584at 1599.044 kb on - strand, within SM_b20584at 1599.044 kb on - strand, within SM_b20584at 1599.093 kb on + strand, within SM_b20584at 1599.093 kb on + strand, within SM_b20584at 1599.093 kb on + strand, within SM_b20584at 1599.094 kb on - strand, within SM_b20584at 1599.094 kb on - strand, within SM_b20584at 1599.120 kb on + strand, within SM_b20584at 1599.360 kb on + strandat 1599.361 kb on - strandat 1599.470 kb on + strandat 1599.471 kb on - strandat 1599.510 kb on + strandat 1599.610 kb on - strandat 1599.638 kb on - strandat 1599.810 kb on - strand, within SM_b20585at 1599.926 kb on + strand, within SM_b20585at 1599.927 kb on - strand, within SM_b20585at 1599.927 kb on - strand, within SM_b20585at 1599.927 kb on - strand, within SM_b20585at 1600.031 kb on + strand, within SM_b20585at 1600.277 kb on + strand, within SM_b20585at 1600.277 kb on + strand, within SM_b20585at 1600.277 kb on + strand, within SM_b20585at 1600.277 kb on + strand, within SM_b20585at 1600.277 kb on + strand, within SM_b20585at 1600.278 kb on - strand, within SM_b20585at 1600.359 kb on - strand, within SM_b20585

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannitol (C)
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1,597,875 + SM_b20583 0.43 -0.6
1,597,875 + SM_b20583 0.43 +0.8
1,597,875 + SM_b20583 0.43 +0.3
1,597,876 - SM_b20583 0.43 +0.0
1,597,876 - SM_b20583 0.43 -0.3
1,597,878 + SM_b20583 0.44 +0.4
1,597,879 - SM_b20583 0.44 -0.2
1,597,938 + SM_b20583 0.49 -0.5
1,597,939 - SM_b20583 0.49 +1.2
1,597,939 - SM_b20583 0.49 +0.1
1,597,939 - SM_b20583 0.49 -0.0
1,598,241 + SM_b20583 0.75 +0.3
1,598,241 + SM_b20583 0.75 +2.8
1,598,241 + SM_b20583 0.75 -0.4
1,598,242 - SM_b20583 0.75 +0.2
1,598,452 + +0.5
1,598,453 - -1.6
1,598,453 - +0.3
1,598,609 + +0.3
1,598,614 + -0.4
1,598,615 - -1.5
1,598,637 - +0.7
1,599,022 - SM_b20584 0.47 -0.6
1,599,044 - SM_b20584 0.50 +0.3
1,599,044 - SM_b20584 0.50 +0.5
1,599,093 + SM_b20584 0.57 +0.6
1,599,093 + SM_b20584 0.57 +0.5
1,599,093 + SM_b20584 0.57 +0.4
1,599,094 - SM_b20584 0.58 +0.9
1,599,094 - SM_b20584 0.58 +0.1
1,599,120 + SM_b20584 0.62 -0.5
1,599,360 + -0.4
1,599,361 - -1.5
1,599,470 + +0.2
1,599,471 - -1.8
1,599,510 + -0.6
1,599,610 - +0.4
1,599,638 - +0.5
1,599,810 - SM_b20585 0.13 -0.4
1,599,926 + SM_b20585 0.20 +0.2
1,599,927 - SM_b20585 0.20 +0.7
1,599,927 - SM_b20585 0.20 -0.6
1,599,927 - SM_b20585 0.20 +0.7
1,600,031 + SM_b20585 0.26 +0.3
1,600,277 + SM_b20585 0.40 +0.2
1,600,277 + SM_b20585 0.40 -0.4
1,600,277 + SM_b20585 0.40 +0.2
1,600,277 + SM_b20585 0.40 +1.2
1,600,277 + SM_b20585 0.40 +0.1
1,600,278 - SM_b20585 0.40 +0.3
1,600,359 - SM_b20585 0.44 +0.2

Or see this region's nucleotide sequence