Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS21145

Experiment: diet=StandardDiet; sample=FecalPellet; mouse3; day4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	diet=StandardDiet; sample=FecalPellet; mouse3; day4
2,291,315	+				-1.5
2,291,315	+				+2.0
2,291,364	+				+0.0
2,291,364	+				+0.9
2,291,408	+		BBR_RS21140	0.17	-1.1
2,291,416	-		BBR_RS21140	0.18	-0.9
2,291,427	+		BBR_RS21140	0.21	-1.9
2,291,432	+		BBR_RS21140	0.22	-1.0
2,291,437	-		BBR_RS21140	0.23	-1.9
2,291,440	-		BBR_RS21140	0.23	-1.4
2,291,480	-		BBR_RS21140	0.31	-0.5
2,291,517	-		BBR_RS21140	0.39	+0.9
2,291,517	-		BBR_RS21140	0.39	+0.0
2,291,517	-		BBR_RS21140	0.39	+1.4
2,291,534	-		BBR_RS21140	0.42	-0.7
2,291,553	-		BBR_RS21140	0.46	-1.7
2,291,558	+		BBR_RS21140	0.47	+0.9
2,291,563	+		BBR_RS21140	0.48	-0.0
2,291,571	-		BBR_RS21140	0.50	-0.5
2,291,616	+		BBR_RS21140	0.59	+1.0
2,291,616	+		BBR_RS21140	0.59	+1.1
2,291,631	-		BBR_RS21140	0.62	-1.4
2,291,632	+		BBR_RS21140	0.62	-1.0
2,291,640	-		BBR_RS21140	0.64	+0.8
2,291,643	+		BBR_RS21140	0.64	-1.7
2,291,643	+		BBR_RS21140	0.64	+1.3
2,291,643	+		BBR_RS21140	0.64	+1.1
2,291,651	-		BBR_RS21140	0.66	-0.7
2,291,653	+		BBR_RS21140	0.66	+0.7
2,291,678	+		BBR_RS21140	0.72	+2.2
2,291,688	+		BBR_RS21140	0.74	+1.0
2,291,695	-		BBR_RS21140	0.75	-0.9
2,291,695	-		BBR_RS21140	0.75	-0.3
2,291,716	-				+2.6
2,291,716	-				-0.6
2,291,727	-				+2.2
2,291,738	+				-0.7
2,291,753	-				+1.0
2,291,779	-				+1.3
2,291,799	+				+0.4
2,291,802	-				-1.1
2,291,814	+				-0.3
2,291,814	+				+0.8
2,291,814	+				-0.2
2,291,814	+				+0.3
2,291,814	+				+0.4
2,291,816	+				-2.3
2,291,822	-		BBR_RS21145	0.35	+2.9
2,291,822	-		BBR_RS21145	0.35	+2.9
2,291,822	-		BBR_RS21145	0.35	-0.2
2,291,822	-		BBR_RS21145	0.35	+0.6
2,291,822	-		BBR_RS21145	0.35	-1.3
2,291,822	-		BBR_RS21145	0.35	+1.9
2,291,847	-		BBR_RS21145	0.43	-2.1
2,291,853	+		BBR_RS21145	0.45	-2.1
2,291,863	-		BBR_RS21145	0.48	-1.0
2,291,863	-		BBR_RS21145	0.48	+0.8
2,291,900	+		BBR_RS21145	0.60	+0.4
2,291,905	+		BBR_RS21145	0.62	+1.6
2,291,908	-		BBR_RS21145	0.63	-2.1
2,291,925	-		BBR_RS21145	0.68	+1.4
2,291,947	-		BBR_RS21145	0.75	-0.1
2,291,948	-		BBR_RS21145	0.76	-1.4
2,291,962	+		BBR_RS21145	0.80	+0.7
2,291,980	-		BBR_RS21145	0.86	+1.6
2,292,032	-				-1.7
2,292,034	+				-0.6
2,292,042	-				+0.3
2,292,053	-				+1.3
2,292,053	-				+3.2
2,292,082	+				-2.0
2,292,106	+				+0.7
2,292,109	-				-0.1
2,292,150	+				-0.5
2,292,150	+				-0.5
2,292,150	+				-1.9
2,292,150	+				+0.2
2,292,156	-				-0.5
2,292,157	+				+3.4
2,292,157	+				+3.2
2,292,158	-				+0.7
2,292,163	+				-0.1
2,292,163	+				-0.2
2,292,177	-				-0.9
2,292,181	+				+0.7
2,292,181	+				-2.1
2,292,206	-				+0.5
2,292,256	+				+0.7
2,292,291	+				+0.2
2,292,291	+				+0.1
2,292,291	+				-1.1
2,292,300	+				-2.2
2,292,300	+				-0.1
2,292,300	+				-1.1
2,292,336	+				-0.6
2,292,337	+				-0.3
2,292,337	+				+1.3
2,292,344	-				+0.5
2,292,344	-				+0.8
2,292,359	+				+2.7
2,292,363	+				-1.2
2,292,369	+				+2.5
2,292,369	+				+0.4
2,292,376	-				-0.9
2,292,390	+				+0.3
2,292,439	-		BBR_RS20030	0.11	-0.8
2,292,446	-		BBR_RS20030	0.13	+1.0
2,292,456	+		BBR_RS20030	0.17	+0.5
2,292,456	+		BBR_RS20030	0.17	+0.3
2,292,472	-		BBR_RS20030	0.22	+0.0
2,292,474	-		BBR_RS20030	0.23	+1.1
2,292,490	+		BBR_RS20030	0.29	-1.4
2,292,505	+		BBR_RS20030	0.34	+0.4
2,292,526	+		BBR_RS20030	0.41	-0.5
2,292,532	-		BBR_RS20030	0.43	+0.4
2,292,544	-		BBR_RS20030	0.48	+1.3
2,292,558	+		BBR_RS20030	0.52	-0.6
2,292,558	+		BBR_RS20030	0.52	-0.9
2,292,558	+		BBR_RS20030	0.52	+0.8
2,292,558	-		BBR_RS20030	0.52	-0.7
2,292,558	-		BBR_RS20030	0.52	-3.0
2,292,559	+		BBR_RS20030	0.53	-0.7
2,292,565	-		BBR_RS20030	0.55	+0.1
2,292,565	-		BBR_RS20030	0.55	+0.8
2,292,567	-		BBR_RS20030	0.56	-3.1
2,292,572	-		BBR_RS20030	0.57	-0.1
2,292,605	-		BBR_RS20030	0.69	+0.9
2,292,655	+		BBR_RS20030	0.86	-0.0
2,292,655	+		BBR_RS20030	0.86	-1.8
2,292,709	+				-1.5
2,292,709	+				-1.0
2,292,709	+				-1.7
2,292,709	+				+0.6
2,292,717	-				+0.7
2,292,717	-				-1.2
2,292,772	+				-1.0
2,292,772	+				+0.5
2,292,780	-				-1.3
2,292,790	-		BBR_RS20035	0.11	+0.8
2,292,797	-		BBR_RS20035	0.13	+0.1
2,292,797	-		BBR_RS20035	0.13	+2.5
2,292,797	-		BBR_RS20035	0.13	+0.3
2,292,804	+		BBR_RS20035	0.14	+0.3
2,292,806	+		BBR_RS20035	0.15	-0.8
2,292,812	-		BBR_RS20035	0.16	-0.0
2,292,814	-		BBR_RS20035	0.17	+0.7
2,292,861	+		BBR_RS20035	0.28	+0.4
2,292,877	-		BBR_RS20035	0.31	+1.1
2,292,885	-		BBR_RS20035	0.33	+0.4
2,292,885	-		BBR_RS20035	0.33	-2.0
2,292,887	-		BBR_RS20035	0.34	+0.6
2,292,903	+		BBR_RS20035	0.37	+0.7
2,292,903	+		BBR_RS20035	0.37	+0.7
2,292,930	+		BBR_RS20035	0.43	-1.9
2,292,937	+		BBR_RS20035	0.45	+0.4
2,292,937	+		BBR_RS20035	0.45	+0.9
2,292,945	-		BBR_RS20035	0.47	-0.2
2,292,945	-		BBR_RS20035	0.47	+0.4
2,292,972	-		BBR_RS20035	0.53	-0.2
2,292,972	-		BBR_RS20035	0.53	-0.7
2,292,973	-		BBR_RS20035	0.53	+0.2
2,292,984	-		BBR_RS20035	0.56	+0.8
2,292,995	+		BBR_RS20035	0.58	-0.9
2,293,005	-		BBR_RS20035	0.61	+0.5
2,293,009	+		BBR_RS20035	0.62	-2.7
2,293,009	+		BBR_RS20035	0.62	+0.2
2,293,017	-		BBR_RS20035	0.63	+0.7
2,293,017	-		BBR_RS20035	0.63	-0.2
2,293,017	-		BBR_RS20035	0.63	+1.1
2,293,021	+		BBR_RS20035	0.64	-0.5