Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS20125

Experiment: diet=StandardDiet; sample=FecalPellet; mouse3; day4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	diet=StandardDiet; sample=FecalPellet; mouse3; day4
2,320,747	-				+1.1
2,320,749	+				-2.2
2,320,757	-				-2.0
2,320,757	-				-1.7
2,320,757	-				-2.0
2,320,759	+				-0.6
2,320,767	-				+0.7
2,320,768	+				-2.2
2,320,775	-				+1.9
2,320,830	-				+2.9
2,320,831	+				-1.3
2,320,881	+				+2.7
2,320,885	+				-0.9
2,320,890	+				+0.8
2,320,895	+				+0.2
2,320,895	+				-0.0
2,320,895	+				+0.5
2,320,901	+				+2.3
2,320,901	+				-0.5
2,320,903	-				-0.9
2,320,903	-				-1.7
2,320,903	-				-0.1
2,320,928	+				-0.1
2,320,928	+				+0.5
2,320,928	+				-1.3
2,320,934	+				-1.5
2,320,934	+				+0.4
2,320,936	-				-1.8
2,320,942	-				+1.7
2,320,942	-				-0.1
2,320,944	+				-0.9
2,320,944	+				-2.1
2,320,961	+				+1.2
2,320,961	+				-0.1
2,320,969	-				+0.7
2,320,979	+				+0.7
2,320,979	+				-2.3
2,320,997	-				-0.8
2,321,015	+				+0.7
2,321,023	+		BBR_RS20125	0.11	-2.1
2,321,028	+		BBR_RS20125	0.11	+0.3
2,321,028	+		BBR_RS20125	0.11	+0.8
2,321,028	+		BBR_RS20125	0.11	-0.5
2,321,042	+		BBR_RS20125	0.13	-3.1
2,321,052	+		BBR_RS20125	0.14	+0.2
2,321,052	+		BBR_RS20125	0.14	-1.7
2,321,060	-		BBR_RS20125	0.15	+1.2
2,321,061	+		BBR_RS20125	0.16	-0.5
2,321,061	+		BBR_RS20125	0.16	+1.4
2,321,069	-		BBR_RS20125	0.17	-0.4
2,321,090	-		BBR_RS20125	0.19	+0.6
2,321,095	+		BBR_RS20125	0.20	-2.8
2,321,095	+		BBR_RS20125	0.20	+2.1
2,321,101	+		BBR_RS20125	0.21	-0.9
2,321,101	+		BBR_RS20125	0.21	+0.2
2,321,103	-		BBR_RS20125	0.21	-2.1
2,321,109	-		BBR_RS20125	0.22	-1.2
2,321,109	-		BBR_RS20125	0.22	+0.7
2,321,109	-		BBR_RS20125	0.22	+2.6
2,321,109	-		BBR_RS20125	0.22	-2.6
2,321,143	+		BBR_RS20125	0.26	+0.2
2,321,143	+		BBR_RS20125	0.26	-1.7
2,321,143	+		BBR_RS20125	0.26	-0.8
2,321,143	+		BBR_RS20125	0.26	-1.6
2,321,143	+		BBR_RS20125	0.26	+0.9
2,321,146	-		BBR_RS20125	0.27	+2.5
2,321,151	-		BBR_RS20125	0.28	-0.4
2,321,151	-		BBR_RS20125	0.28	+0.5
2,321,151	-		BBR_RS20125	0.28	+0.4
2,321,167	+		BBR_RS20125	0.30	-0.5
2,321,176	+		BBR_RS20125	0.31	+0.2
2,321,181	+		BBR_RS20125	0.31	-0.8
2,321,190	-		BBR_RS20125	0.33	-1.7
2,321,206	-		BBR_RS20125	0.35	-2.0
2,321,206	-		BBR_RS20125	0.35	+1.2
2,321,206	-		BBR_RS20125	0.35	+0.1
2,321,206	-		BBR_RS20125	0.35	+1.2
2,321,207	+		BBR_RS20125	0.35	+0.7
2,321,245	-		BBR_RS20125	0.40	+0.0
2,321,245	-		BBR_RS20125	0.40	-1.5
2,321,247	+		BBR_RS20125	0.40	-0.1
2,321,247	+		BBR_RS20125	0.40	+0.4
2,321,247	+		BBR_RS20125	0.40	-1.5
2,321,247	+		BBR_RS20125	0.40	-1.5
2,321,247	+		BBR_RS20125	0.40	-2.1
2,321,255	-		BBR_RS20125	0.41	-0.2
2,321,263	-		BBR_RS20125	0.42	-1.2
2,321,273	-		BBR_RS20125	0.44	+1.7
2,321,277	-		BBR_RS20125	0.44	+0.2
2,321,297	+		BBR_RS20125	0.47	-1.1
2,321,320	-		BBR_RS20125	0.50	-1.1
2,321,322	-		BBR_RS20125	0.50	-1.8
2,321,330	+		BBR_RS20125	0.51	+2.3
2,321,330	+		BBR_RS20125	0.51	-1.9
2,321,338	-		BBR_RS20125	0.52	-0.2
2,321,338	-		BBR_RS20125	0.52	+0.5
2,321,348	-		BBR_RS20125	0.54	-2.0
2,321,348	-		BBR_RS20125	0.54	-1.5
2,321,365	-		BBR_RS20125	0.56	-1.6
2,321,365	-		BBR_RS20125	0.56	-2.7
2,321,391	-		BBR_RS20125	0.59	+0.3
2,321,409	+		BBR_RS20125	0.62	-0.2
2,321,409	-		BBR_RS20125	0.62	-0.0
2,321,413	+		BBR_RS20125	0.62	-0.8
2,321,417	-		BBR_RS20125	0.63	+0.3
2,321,417	-		BBR_RS20125	0.63	-2.0
2,321,444	+		BBR_RS20125	0.66	+0.7
2,321,451	-		BBR_RS20125	0.67	-1.3
2,321,452	-		BBR_RS20125	0.67	-1.5
2,321,460	+		BBR_RS20125	0.68	+1.0
2,321,460	+		BBR_RS20125	0.68	-1.4
2,321,462	+		BBR_RS20125	0.69	-1.1
2,321,470	+		BBR_RS20125	0.70	+0.6
2,321,470	+		BBR_RS20125	0.70	-0.3
2,321,470	+		BBR_RS20125	0.70	-1.3
2,321,470	+		BBR_RS20125	0.70	-0.2
2,321,470	+		BBR_RS20125	0.70	-2.8
2,321,470	+		BBR_RS20125	0.70	-1.1
2,321,470	+		BBR_RS20125	0.70	-0.9
2,321,470	+		BBR_RS20125	0.70	-1.7
2,321,478	-		BBR_RS20125	0.71	+0.6
2,321,508	-		BBR_RS20125	0.75	-1.4
2,321,508	-		BBR_RS20125	0.75	-0.7
2,321,514	+		BBR_RS20125	0.76	+0.6
2,321,528	-		BBR_RS20125	0.77	+1.7
2,321,538	-		BBR_RS20125	0.79	+0.5
2,321,549	+		BBR_RS20125	0.80	-1.2
2,321,552	-		BBR_RS20125	0.81	+0.5
2,321,578	-		BBR_RS20125	0.84	+0.3
2,321,583	-		BBR_RS20125	0.85	-0.5
2,321,591	-		BBR_RS20125	0.86	-0.1
2,321,598	+		BBR_RS20125	0.87	+2.5
2,321,598	+		BBR_RS20125	0.87	+1.4
2,321,599	-		BBR_RS20125	0.87	+0.9
2,321,600	-		BBR_RS20125	0.87	-1.0
2,321,606	+		BBR_RS20125	0.88	-0.3
2,321,606	+		BBR_RS20125	0.88	+1.7
2,321,606	+		BBR_RS20125	0.88	-2.6
2,321,606	+		BBR_RS20125	0.88	-1.6
2,321,606	-		BBR_RS20125	0.88	-2.2
2,321,608	+		BBR_RS20125	0.88	-1.1
2,321,608	+		BBR_RS20125	0.88	-1.7
2,321,608	+		BBR_RS20125	0.88	-2.6
2,321,614	-		BBR_RS20125	0.89	+2.3
2,321,614	-		BBR_RS20125	0.89	+0.4
2,321,614	-		BBR_RS20125	0.89	+2.1
2,321,614	-		BBR_RS20125	0.89	+2.9
2,321,614	-		BBR_RS20125	0.89	-1.0
2,321,615	-		BBR_RS20125	0.89	-1.4
2,321,616	-		BBR_RS20125	0.89	-1.0
2,321,616	-		BBR_RS20125	0.89	-0.8
2,321,622	-		BBR_RS20125	0.90	-0.7
2,321,647	+				-1.9
2,321,647	+				-0.5
2,321,649	-				-2.1
2,321,679	+				+3.2
2,321,679	+				+0.1
2,321,679	+				+0.4
2,321,682	-				+2.5
2,321,725	-				+0.9
2,321,733	+				+1.3
2,321,733	+				-0.3
2,321,735	-				+0.6
2,321,741	-				-0.2
2,321,743	+				+0.5
2,321,752	+				+1.9
2,321,773	+				+0.3
2,321,781	+				+0.9
2,321,785	-				+0.4
2,321,785	-				+0.5
2,321,843	-				-0.4
2,321,843	-				+1.3
2,321,869	-				+0.6
2,321,884	-				+2.1
2,321,887	-				+1.2
2,321,902	-				-2.5
2,321,902	-				-2.0
2,321,902	-				+1.3
2,321,918	+				+0.4
2,321,919	-				+0.5
2,321,921	+				-1.5
2,321,926	-				-2.2
2,321,926	-				+0.9
2,321,926	-				-1.4
2,321,940	+				-3.1
2,321,940	+				-1.2
2,321,948	-				+0.4
2,321,948	-				-0.3
2,321,948	-				-0.1
2,321,948	-				+2.2
2,321,948	-				+0.9
2,321,953	+				+1.2
2,321,953	+				+1.6
2,321,953	-				-1.8
2,321,957	-				+1.7
2,321,961	-				-2.5
2,321,975	-				+0.1
2,321,975	-				+2.6
2,321,986	+				-0.1
2,321,995	-				-0.6
2,321,995	-				-2.1
2,322,002	+				+0.6
2,322,002	+				-2.1
2,322,002	+				+0.9
2,322,002	+				+1.3
2,322,002	-				+0.7
2,322,004	-				-0.1
2,322,010	-		BBR_RS20130	0.10	+0.3
2,322,010	-		BBR_RS20130	0.10	+1.0
2,322,010	-		BBR_RS20130	0.10	-0.2
2,322,010	-		BBR_RS20130	0.10	-0.4
2,322,036	-		BBR_RS20130	0.12	+0.8
2,322,055	+		BBR_RS20130	0.14	-0.8
2,322,065	+		BBR_RS20130	0.15	-1.3
2,322,070	+		BBR_RS20130	0.15	-0.0
2,322,070	+		BBR_RS20130	0.15	-0.4
2,322,073	-		BBR_RS20130	0.15	+0.4
2,322,073	-		BBR_RS20130	0.15	-2.0
2,322,078	+		BBR_RS20130	0.16	-2.3
2,322,078	+		BBR_RS20130	0.16	-0.6
2,322,078	+		BBR_RS20130	0.16	+0.7
2,322,078	+		BBR_RS20130	0.16	-1.7
2,322,086	-		BBR_RS20130	0.16	-0.3
2,322,086	-		BBR_RS20130	0.16	-1.6
2,322,087	-		BBR_RS20130	0.17	+2.6
2,322,087	-		BBR_RS20130	0.17	+3.1
2,322,092	+		BBR_RS20130	0.17	-1.1
2,322,101	+		BBR_RS20130	0.18	-1.7
2,322,102	+		BBR_RS20130	0.18	+0.0
2,322,109	-		BBR_RS20130	0.18	-0.1
2,322,124	-		BBR_RS20130	0.19	-0.9
2,322,124	-		BBR_RS20130	0.19	+0.3
2,322,131	+		BBR_RS20130	0.20	-1.8
2,322,131	+		BBR_RS20130	0.20	+1.5
2,322,131	+		BBR_RS20130	0.20	-0.0
2,322,131	+		BBR_RS20130	0.20	-0.3
2,322,137	-		BBR_RS20130	0.20	-0.1
2,322,139	-		BBR_RS20130	0.21	+1.7
2,322,139	-		BBR_RS20130	0.21	-0.2
2,322,139	-		BBR_RS20130	0.21	+0.1
2,322,139	-		BBR_RS20130	0.21	-1.1
2,322,139	-		BBR_RS20130	0.21	+1.8
2,322,173	-		BBR_RS20130	0.23	-1.6
2,322,175	+		BBR_RS20130	0.23	-1.5
2,322,175	-		BBR_RS20130	0.23	-0.6
2,322,176	-		BBR_RS20130	0.24	-1.6
2,322,186	+		BBR_RS20130	0.24	+0.4
2,322,205	+		BBR_RS20130	0.26	+2.5
2,322,208	-		BBR_RS20130	0.26	+0.9
2,322,213	-		BBR_RS20130	0.26	+2.4
2,322,222	-		BBR_RS20130	0.27	+2.6
2,322,253	+		BBR_RS20130	0.30	-2.0
2,322,253	+		BBR_RS20130	0.30	-0.1
2,322,253	+		BBR_RS20130	0.30	-0.9
2,322,261	-		BBR_RS20130	0.30	+0.8
2,322,290	+		BBR_RS20130	0.33	+1.1
2,322,314	-		BBR_RS20130	0.34	-0.2
2,322,353	+		BBR_RS20130	0.38	-1.0
2,322,355	+		BBR_RS20130	0.38	+1.8
2,322,392	-		BBR_RS20130	0.41	+0.5
2,322,407	+		BBR_RS20130	0.42	-2.6
2,322,409	+		BBR_RS20130	0.42	-1.6
2,322,412	+		BBR_RS20130	0.42	+2.3
2,322,434	-		BBR_RS20130	0.44	+1.6
2,322,434	-		BBR_RS20130	0.44	+3.5
2,322,444	-		BBR_RS20130	0.45	+0.2
2,322,449	+		BBR_RS20130	0.45	-1.1
2,322,457	+		BBR_RS20130	0.46	+0.3
2,322,457	+		BBR_RS20130	0.46	+0.4
2,322,457	+		BBR_RS20130	0.46	+0.2
2,322,481	+		BBR_RS20130	0.48	-2.0
2,322,489	+		BBR_RS20130	0.48	+0.7
2,322,491	+		BBR_RS20130	0.48	-0.5
2,322,495	-		BBR_RS20130	0.49	+0.0
2,322,497	-		BBR_RS20130	0.49	-1.6
2,322,505	-		BBR_RS20130	0.50	+1.8
2,322,523	+		BBR_RS20130	0.51	-2.1
2,322,523	+		BBR_RS20130	0.51	-1.7
2,322,523	+		BBR_RS20130	0.51	+0.3
2,322,538	+		BBR_RS20130	0.52	-0.4
2,322,552	+		BBR_RS20130	0.53	-0.1
2,322,553	+		BBR_RS20130	0.53	-0.5
2,322,553	+		BBR_RS20130	0.53	-0.6
2,322,553	+		BBR_RS20130	0.53	+0.5
2,322,560	-		BBR_RS20130	0.54	-1.3
2,322,560	-		BBR_RS20130	0.54	+2.5
2,322,578	+		BBR_RS20130	0.55	+0.2
2,322,578	+		BBR_RS20130	0.55	-2.6
2,322,578	+		BBR_RS20130	0.55	-0.6
2,322,583	-		BBR_RS20130	0.56	+0.1
2,322,583	-		BBR_RS20130	0.56	-1.2
2,322,591	+		BBR_RS20130	0.56	+1.0
2,322,613	-		BBR_RS20130	0.58	-0.2
2,322,636	-		BBR_RS20130	0.60	-2.2
2,322,641	-		BBR_RS20130	0.60	+0.8
2,322,650	-		BBR_RS20130	0.61	+0.3
2,322,650	-		BBR_RS20130	0.61	-0.4
2,322,667	-		BBR_RS20130	0.62	+2.8
2,322,674	+		BBR_RS20130	0.63	+1.8
2,322,688	+		BBR_RS20130	0.64	-1.4
2,322,696	-		BBR_RS20130	0.65	-0.4