Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS20010

Experiment: diet=StandardDiet; sample=FecalPellet; mouse3; day4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	diet=StandardDiet; sample=FecalPellet; mouse3; day4
2,287,407	-		BBR_RS20005	0.44	+0.3
2,287,417	+		BBR_RS20005	0.45	-0.2
2,287,452	-		BBR_RS20005	0.48	-0.3
2,287,454	+		BBR_RS20005	0.48	+1.8
2,287,500	+		BBR_RS20005	0.52	+0.6
2,287,501	-		BBR_RS20005	0.52	-0.6
2,287,502	+		BBR_RS20005	0.52	+0.4
2,287,502	+		BBR_RS20005	0.52	+0.4
2,287,508	-		BBR_RS20005	0.53	+1.6
2,287,508	-		BBR_RS20005	0.53	+0.6
2,287,509	-		BBR_RS20005	0.53	-3.0
2,287,509	-		BBR_RS20005	0.53	-0.6
2,287,538	+		BBR_RS20005	0.55	+0.9
2,287,542	-		BBR_RS20005	0.55	+1.1
2,287,547	+		BBR_RS20005	0.56	+0.9
2,287,548	+		BBR_RS20005	0.56	-2.9
2,287,548	+		BBR_RS20005	0.56	-0.0
2,287,554	+		BBR_RS20005	0.56	+2.1
2,287,562	-		BBR_RS20005	0.57	+0.1
2,287,562	-		BBR_RS20005	0.57	-1.3
2,287,613	+		BBR_RS20005	0.61	-0.7
2,287,685	+		BBR_RS20005	0.68	-0.6
2,287,707	+		BBR_RS20005	0.69	+2.6
2,287,714	+		BBR_RS20005	0.70	+0.3
2,287,722	-		BBR_RS20005	0.71	+1.2
2,287,759	+		BBR_RS20005	0.74	-0.2
2,287,761	+		BBR_RS20005	0.74	+0.4
2,287,775	-		BBR_RS20005	0.75	+0.4
2,287,775	-		BBR_RS20005	0.75	-0.6
2,287,775	-		BBR_RS20005	0.75	-1.4
2,287,782	+		BBR_RS20005	0.76	+0.3
2,287,785	-		BBR_RS20005	0.76	-0.8
2,287,785	-		BBR_RS20005	0.76	-2.5
2,287,790	-		BBR_RS20005	0.77	-1.1
2,287,795	-		BBR_RS20005	0.77	-2.5
2,287,798	+		BBR_RS20005	0.77	-0.7
2,287,798	+		BBR_RS20005	0.77	-3.1
2,287,806	-		BBR_RS20005	0.78	-0.0
2,287,806	-		BBR_RS20005	0.78	+1.6
2,287,806	-		BBR_RS20005	0.78	-3.3
2,287,806	-		BBR_RS20005	0.78	-1.2
2,287,808	-		BBR_RS20005	0.78	-0.6
2,287,808	-		BBR_RS20005	0.78	+1.8
2,287,808	-		BBR_RS20005	0.78	+0.7
2,287,808	-		BBR_RS20005	0.78	-2.1
2,287,808	-		BBR_RS20005	0.78	-0.4
2,287,808	-		BBR_RS20005	0.78	+0.6
2,287,813	+		BBR_RS20005	0.78	+0.5
2,287,813	+		BBR_RS20005	0.78	+0.0
2,287,821	+		BBR_RS20005	0.79	-2.2
2,287,829	-		BBR_RS20005	0.80	-0.3
2,287,839	+		BBR_RS20005	0.81	+0.4
2,287,847	-		BBR_RS20005	0.81	-0.9
2,287,853	+		BBR_RS20005	0.82	-2.4
2,287,885	+		BBR_RS20005	0.85	+1.5
2,287,887	+		BBR_RS20005	0.85	-0.8
2,287,890	+		BBR_RS20005	0.85	+0.9
2,287,890	+		BBR_RS20005	0.85	+0.9
2,287,891	+		BBR_RS20005	0.85	-1.0
2,287,898	-		BBR_RS20005	0.86	+1.0
2,287,903	-		BBR_RS20005	0.86	-0.8
2,287,922	-		BBR_RS20005	0.88	-0.1
2,287,922	-		BBR_RS20005	0.88	+0.4
2,287,925	+		BBR_RS20005	0.88	+0.1
2,287,933	-		BBR_RS20005	0.89	-0.6
2,287,935	+		BBR_RS20005	0.89	-2.5
2,287,997	+				-0.3
2,288,006	+				-1.1
2,288,012	-				+1.1
2,288,016	+				-0.4
2,288,019	-				+0.1
2,288,042	+				-2.4
2,288,079	+				+0.3
2,288,089	+				-0.9
2,288,089	+				-1.9
2,288,089	+				+1.8
2,288,089	+				+1.2
2,288,089	+				-1.0
2,288,089	+				+0.5
2,288,097	-				-1.0
2,288,097	-				-1.3
2,288,097	-				+1.2
2,288,123	+				+2.3
2,288,145	+				+0.3
2,288,145	+				-0.3
2,288,240	+				-0.5
2,288,277	+				-0.3
2,288,285	+				+0.4
2,288,324	+				+2.9
2,288,324	+				+3.3
2,288,347	+				-0.7
2,288,348	-				+2.5
2,288,348	-				-1.6
2,288,348	-				+1.8
2,288,348	-				-0.1
2,288,363	+				+0.8
2,288,363	+				+0.5
2,288,381	-				-0.1
2,288,381	-				-0.2
2,288,391	-				-0.4
2,288,484	-		BBR_RS20010	0.22	+2.0
2,288,484	-		BBR_RS20010	0.22	+0.9
2,288,484	-		BBR_RS20010	0.22	+1.5
2,288,484	-		BBR_RS20010	0.22	+1.4
2,288,484	-		BBR_RS20010	0.22	-1.4
2,288,484	-		BBR_RS20010	0.22	+1.6
2,288,484	-		BBR_RS20010	0.22	+1.1
2,288,506	-		BBR_RS20010	0.28	-0.8
2,288,507	-		BBR_RS20010	0.28	+2.0
2,288,519	+		BBR_RS20010	0.31	+0.8
2,288,527	-		BBR_RS20010	0.33	+1.5
2,288,528	-		BBR_RS20010	0.33	+0.0
2,288,536	+		BBR_RS20010	0.35	+0.8
2,288,547	+		BBR_RS20010	0.37	+1.4
2,288,550	-		BBR_RS20010	0.38	-2.2
2,288,563	-		BBR_RS20010	0.41	-1.0
2,288,563	-		BBR_RS20010	0.41	+1.4
2,288,564	-		BBR_RS20010	0.42	-3.2
2,288,587	-		BBR_RS20010	0.47	-0.2
2,288,587	-		BBR_RS20010	0.47	+0.6
2,288,626	-		BBR_RS20010	0.57	-1.1
2,288,639	+		BBR_RS20010	0.60	-0.2
2,288,640	+		BBR_RS20010	0.60	-1.7
2,288,657	+		BBR_RS20010	0.64	-2.4
2,288,657	+		BBR_RS20010	0.64	+0.3
2,288,657	+		BBR_RS20010	0.64	-2.5
2,288,657	+		BBR_RS20010	0.64	+3.7
2,288,665	-		BBR_RS20010	0.66	+1.1
2,288,692	+		BBR_RS20010	0.72	+2.7
2,288,702	+		BBR_RS20010	0.75	-0.5
2,288,720	+		BBR_RS20010	0.79	-1.0
2,288,720	+		BBR_RS20010	0.79	+3.3
2,288,720	-		BBR_RS20010	0.79	+1.5
2,288,728	-		BBR_RS20010	0.81	-0.5
2,288,732	+		BBR_RS20010	0.82	-0.0
2,288,734	+		BBR_RS20010	0.83	+0.5
2,288,744	+		BBR_RS20010	0.85	+3.3
2,288,749	+		BBR_RS20010	0.86	-0.1
2,288,755	+		BBR_RS20010	0.88	+0.9
2,288,757	-		BBR_RS20010	0.88	+1.5
2,288,757	-		BBR_RS20010	0.88	-2.6
2,288,757	-		BBR_RS20010	0.88	-2.3
2,288,757	-		BBR_RS20010	0.88	-0.1
2,288,778	-				+1.6
2,288,778	-				+1.1
2,288,778	-				+0.4
2,288,778	-				+0.5
2,288,795	+				+0.3
2,288,795	+				-0.1
2,288,795	+				-1.4
2,288,795	+				+0.7
2,288,795	+				+3.1
2,288,797	+				+1.1
2,288,797	+				+1.8
2,288,800	+				+2.7
2,288,800	+				-0.2
2,288,800	+				+2.1
2,288,803	-				+0.8
2,288,803	-				-2.9
2,288,803	-				+1.6
2,288,803	-				+1.4
2,288,803	-				-1.5
2,288,808	-				-0.9
2,288,808	-				+0.1
2,288,847	-				-0.2
2,288,847	-				-0.6
2,288,861	-				+1.1