Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS13685

Experiment: diet=StandardDiet; sample=FecalPellet; mouse3; day4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS13680 and BBR_RS13685 are separated by 357 nucleotidesBBR_RS13685 and BBR_RS13690 are separated by 61 nucleotides BBR_RS13680: BBR_RS13680 - SPFH domain-containing protein, at 843,446 to 844,357 _RS13680 BBR_RS13685: BBR_RS13685 - DUF4143 domain-containing protein, at 844,715 to 845,152 _RS13685 BBR_RS13690: BBR_RS13690 - patatin family protein, at 845,214 to 846,059 _RS13690 Position (kb) 844 845 846Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 843.722 kb on + strand, within BBR_RS13680at 843.728 kb on - strand, within BBR_RS13680at 843.728 kb on - strand, within BBR_RS13680at 843.762 kb on + strand, within BBR_RS13680at 843.770 kb on - strand, within BBR_RS13680at 843.779 kb on - strand, within BBR_RS13680at 843.796 kb on + strand, within BBR_RS13680at 843.838 kb on + strand, within BBR_RS13680at 843.838 kb on + strand, within BBR_RS13680at 843.838 kb on + strand, within BBR_RS13680at 843.847 kb on - strand, within BBR_RS13680at 843.851 kb on + strand, within BBR_RS13680at 843.884 kb on + strand, within BBR_RS13680at 843.892 kb on - strand, within BBR_RS13680at 843.894 kb on - strand, within BBR_RS13680at 843.929 kb on + strand, within BBR_RS13680at 843.931 kb on + strand, within BBR_RS13680at 843.939 kb on - strand, within BBR_RS13680at 843.939 kb on - strand, within BBR_RS13680at 843.970 kb on + strand, within BBR_RS13680at 844.101 kb on + strand, within BBR_RS13680at 844.107 kb on - strand, within BBR_RS13680at 844.107 kb on - strand, within BBR_RS13680at 844.146 kb on - strand, within BBR_RS13680at 844.153 kb on + strand, within BBR_RS13680at 844.153 kb on + strand, within BBR_RS13680at 844.153 kb on + strand, within BBR_RS13680at 844.153 kb on + strand, within BBR_RS13680at 844.153 kb on + strand, within BBR_RS13680at 844.156 kb on - strand, within BBR_RS13680at 844.161 kb on - strand, within BBR_RS13680at 844.168 kb on + strand, within BBR_RS13680at 844.183 kb on + strand, within BBR_RS13680at 844.191 kb on - strand, within BBR_RS13680at 844.205 kb on + strand, within BBR_RS13680at 844.208 kb on - strand, within BBR_RS13680at 844.208 kb on - strand, within BBR_RS13680at 844.216 kb on + strand, within BBR_RS13680at 844.258 kb on + strand, within BBR_RS13680at 844.258 kb on + strand, within BBR_RS13680at 844.258 kb on + strand, within BBR_RS13680at 844.289 kb on - strandat 844.328 kb on + strandat 844.387 kb on + strandat 844.527 kb on + strandat 844.535 kb on - strandat 844.624 kb on + strandat 844.624 kb on + strandat 844.709 kb on + strandat 844.719 kb on - strandat 844.789 kb on + strand, within BBR_RS13685at 844.803 kb on + strand, within BBR_RS13685at 844.808 kb on + strand, within BBR_RS13685at 844.817 kb on + strand, within BBR_RS13685at 844.853 kb on + strand, within BBR_RS13685at 844.861 kb on - strand, within BBR_RS13685at 844.904 kb on + strand, within BBR_RS13685at 844.910 kb on - strand, within BBR_RS13685at 844.912 kb on - strand, within BBR_RS13685at 844.914 kb on - strand, within BBR_RS13685at 844.994 kb on + strand, within BBR_RS13685at 844.994 kb on + strand, within BBR_RS13685at 845.018 kb on + strand, within BBR_RS13685at 845.018 kb on + strand, within BBR_RS13685at 845.018 kb on + strand, within BBR_RS13685at 845.018 kb on + strand, within BBR_RS13685at 845.018 kb on + strand, within BBR_RS13685at 845.018 kb on + strand, within BBR_RS13685at 845.018 kb on + strand, within BBR_RS13685at 845.020 kb on - strand, within BBR_RS13685at 845.026 kb on - strand, within BBR_RS13685at 845.026 kb on - strand, within BBR_RS13685at 845.069 kb on - strand, within BBR_RS13685at 845.185 kb on + strandat 845.195 kb on + strandat 845.201 kb on - strandat 845.250 kb on + strandat 845.256 kb on + strandat 845.257 kb on - strandat 845.265 kb on - strandat 845.304 kb on + strand, within BBR_RS13690at 845.311 kb on + strand, within BBR_RS13690at 845.311 kb on + strand, within BBR_RS13690at 845.319 kb on - strand, within BBR_RS13690at 845.369 kb on - strand, within BBR_RS13690at 845.392 kb on + strand, within BBR_RS13690at 845.400 kb on - strand, within BBR_RS13690at 845.400 kb on - strand, within BBR_RS13690at 845.436 kb on - strand, within BBR_RS13690at 845.444 kb on - strand, within BBR_RS13690at 845.524 kb on - strand, within BBR_RS13690at 845.540 kb on - strand, within BBR_RS13690at 845.540 kb on - strand, within BBR_RS13690at 845.540 kb on - strand, within BBR_RS13690at 845.547 kb on + strand, within BBR_RS13690at 845.549 kb on - strand, within BBR_RS13690at 845.592 kb on + strand, within BBR_RS13690at 845.592 kb on + strand, within BBR_RS13690at 845.607 kb on - strand, within BBR_RS13690at 845.705 kb on - strand, within BBR_RS13690at 845.787 kb on - strand, within BBR_RS13690at 845.808 kb on - strand, within BBR_RS13690at 845.808 kb on - strand, within BBR_RS13690at 845.818 kb on - strand, within BBR_RS13690at 845.865 kb on - strand, within BBR_RS13690at 845.950 kb on + strand, within BBR_RS13690at 846.006 kb on + strandat 846.006 kb on + strandat 846.030 kb on + strandat 846.117 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; mouse3; day4
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843,722 + BBR_RS13680 0.30 +0.3
843,728 - BBR_RS13680 0.31 -1.2
843,728 - BBR_RS13680 0.31 +0.7
843,762 + BBR_RS13680 0.35 -1.0
843,770 - BBR_RS13680 0.36 +0.8
843,779 - BBR_RS13680 0.37 -0.0
843,796 + BBR_RS13680 0.38 +0.4
843,838 + BBR_RS13680 0.43 +0.1
843,838 + BBR_RS13680 0.43 -0.4
843,838 + BBR_RS13680 0.43 +2.4
843,847 - BBR_RS13680 0.44 +2.4
843,851 + BBR_RS13680 0.44 +0.7
843,884 + BBR_RS13680 0.48 -1.7
843,892 - BBR_RS13680 0.49 +0.7
843,894 - BBR_RS13680 0.49 +1.9
843,929 + BBR_RS13680 0.53 +2.3
843,931 + BBR_RS13680 0.53 -2.7
843,939 - BBR_RS13680 0.54 -1.5
843,939 - BBR_RS13680 0.54 +0.4
843,970 + BBR_RS13680 0.57 -1.7
844,101 + BBR_RS13680 0.72 -0.3
844,107 - BBR_RS13680 0.72 -2.1
844,107 - BBR_RS13680 0.72 +0.6
844,146 - BBR_RS13680 0.77 -1.4
844,153 + BBR_RS13680 0.78 -1.5
844,153 + BBR_RS13680 0.78 -1.2
844,153 + BBR_RS13680 0.78 +1.5
844,153 + BBR_RS13680 0.78 +0.4
844,153 + BBR_RS13680 0.78 -0.9
844,156 - BBR_RS13680 0.78 -1.6
844,161 - BBR_RS13680 0.78 +0.6
844,168 + BBR_RS13680 0.79 -0.8
844,183 + BBR_RS13680 0.81 -1.1
844,191 - BBR_RS13680 0.82 -0.0
844,205 + BBR_RS13680 0.83 +0.7
844,208 - BBR_RS13680 0.84 +0.4
844,208 - BBR_RS13680 0.84 +1.5
844,216 + BBR_RS13680 0.84 +0.1
844,258 + BBR_RS13680 0.89 +1.0
844,258 + BBR_RS13680 0.89 +0.7
844,258 + BBR_RS13680 0.89 +3.2
844,289 - -1.6
844,328 + +0.3
844,387 + -0.8
844,527 + -1.9
844,535 - +0.4
844,624 + -1.4
844,624 + -1.8
844,709 + +1.1
844,719 - +1.5
844,789 + BBR_RS13685 0.17 +1.6
844,803 + BBR_RS13685 0.20 -1.1
844,808 + BBR_RS13685 0.21 -1.3
844,817 + BBR_RS13685 0.23 +3.8
844,853 + BBR_RS13685 0.32 -1.2
844,861 - BBR_RS13685 0.33 -0.1
844,904 + BBR_RS13685 0.43 +0.2
844,910 - BBR_RS13685 0.45 +2.9
844,912 - BBR_RS13685 0.45 +1.7
844,914 - BBR_RS13685 0.45 +0.1
844,994 + BBR_RS13685 0.64 -0.6
844,994 + BBR_RS13685 0.64 -1.9
845,018 + BBR_RS13685 0.69 +3.2
845,018 + BBR_RS13685 0.69 +0.8
845,018 + BBR_RS13685 0.69 +2.9
845,018 + BBR_RS13685 0.69 -0.5
845,018 + BBR_RS13685 0.69 -0.5
845,018 + BBR_RS13685 0.69 +1.0
845,018 + BBR_RS13685 0.69 -0.4
845,020 - BBR_RS13685 0.70 -2.1
845,026 - BBR_RS13685 0.71 +1.1
845,026 - BBR_RS13685 0.71 +3.4
845,069 - BBR_RS13685 0.81 +1.1
845,185 + +2.4
845,195 + +2.8
845,201 - +1.0
845,250 + -1.8
845,256 + +0.6
845,257 - -0.4
845,265 - +1.4
845,304 + BBR_RS13690 0.11 +1.0
845,311 + BBR_RS13690 0.11 -0.3
845,311 + BBR_RS13690 0.11 -0.5
845,319 - BBR_RS13690 0.12 +0.9
845,369 - BBR_RS13690 0.18 -1.2
845,392 + BBR_RS13690 0.21 -1.9
845,400 - BBR_RS13690 0.22 +1.9
845,400 - BBR_RS13690 0.22 -0.1
845,436 - BBR_RS13690 0.26 -1.9
845,444 - BBR_RS13690 0.27 +1.2
845,524 - BBR_RS13690 0.37 +0.0
845,540 - BBR_RS13690 0.39 +1.0
845,540 - BBR_RS13690 0.39 -1.2
845,540 - BBR_RS13690 0.39 -1.2
845,547 + BBR_RS13690 0.39 -1.8
845,549 - BBR_RS13690 0.40 +0.8
845,592 + BBR_RS13690 0.45 -0.9
845,592 + BBR_RS13690 0.45 +2.8
845,607 - BBR_RS13690 0.46 +0.5
845,705 - BBR_RS13690 0.58 +1.8
845,787 - BBR_RS13690 0.68 +0.2
845,808 - BBR_RS13690 0.70 -0.5
845,808 - BBR_RS13690 0.70 +0.7
845,818 - BBR_RS13690 0.71 -0.1
845,865 - BBR_RS13690 0.77 -0.3
845,950 + BBR_RS13690 0.87 +1.5
846,006 + -0.2
846,006 + -0.9
846,030 + -0.7
846,117 + -2.4

Or see this region's nucleotide sequence