Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS12880

Experiment: diet=StandardDiet; sample=FecalPellet; mouse3; day4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS12875 and BBR_RS12880 are separated by 111 nucleotidesBBR_RS12880 and BBR_RS12885 are separated by 128 nucleotides BBR_RS12875: BBR_RS12875 - lipoate--protein ligase A, at 638,944 to 640,107 _RS12875 BBR_RS12880: BBR_RS12880 - Crp/Fnr family transcriptional regulator, at 640,219 to 640,938 _RS12880 BBR_RS12885: BBR_RS12885 - penicillin-binding protein, at 641,067 to 643,337 _RS12885 Position (kb) 640 641Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 639.222 kb on + strand, within BBR_RS12875at 639.241 kb on + strand, within BBR_RS12875at 639.253 kb on + strand, within BBR_RS12875at 639.253 kb on + strand, within BBR_RS12875at 639.266 kb on + strand, within BBR_RS12875at 639.290 kb on - strand, within BBR_RS12875at 639.302 kb on + strand, within BBR_RS12875at 639.303 kb on + strand, within BBR_RS12875at 639.312 kb on + strand, within BBR_RS12875at 639.320 kb on - strand, within BBR_RS12875at 639.320 kb on - strand, within BBR_RS12875at 639.410 kb on + strand, within BBR_RS12875at 639.454 kb on - strand, within BBR_RS12875at 639.504 kb on - strand, within BBR_RS12875at 639.533 kb on + strand, within BBR_RS12875at 639.571 kb on + strand, within BBR_RS12875at 639.571 kb on + strand, within BBR_RS12875at 639.579 kb on - strand, within BBR_RS12875at 639.579 kb on - strand, within BBR_RS12875at 639.579 kb on - strand, within BBR_RS12875at 639.581 kb on + strand, within BBR_RS12875at 639.593 kb on - strand, within BBR_RS12875at 639.606 kb on + strand, within BBR_RS12875at 639.629 kb on - strand, within BBR_RS12875at 639.630 kb on - strand, within BBR_RS12875at 639.635 kb on - strand, within BBR_RS12875at 639.651 kb on - strand, within BBR_RS12875at 639.663 kb on + strand, within BBR_RS12875at 639.671 kb on - strand, within BBR_RS12875at 639.677 kb on + strand, within BBR_RS12875at 639.677 kb on + strand, within BBR_RS12875at 639.677 kb on + strand, within BBR_RS12875at 639.678 kb on - strand, within BBR_RS12875at 639.678 kb on - strand, within BBR_RS12875at 639.685 kb on - strand, within BBR_RS12875at 639.720 kb on - strand, within BBR_RS12875at 639.722 kb on - strand, within BBR_RS12875at 639.731 kb on + strand, within BBR_RS12875at 639.756 kb on + strand, within BBR_RS12875at 639.756 kb on + strand, within BBR_RS12875at 639.756 kb on + strand, within BBR_RS12875at 639.757 kb on + strand, within BBR_RS12875at 639.773 kb on + strand, within BBR_RS12875at 639.773 kb on + strand, within BBR_RS12875at 639.779 kb on + strand, within BBR_RS12875at 639.787 kb on - strand, within BBR_RS12875at 639.804 kb on + strand, within BBR_RS12875at 639.858 kb on + strand, within BBR_RS12875at 639.882 kb on + strand, within BBR_RS12875at 639.890 kb on - strand, within BBR_RS12875at 639.892 kb on + strand, within BBR_RS12875at 639.892 kb on + strand, within BBR_RS12875at 639.894 kb on + strand, within BBR_RS12875at 639.900 kb on - strand, within BBR_RS12875at 639.943 kb on + strand, within BBR_RS12875at 639.956 kb on - strand, within BBR_RS12875at 639.975 kb on + strand, within BBR_RS12875at 640.029 kb on - strandat 640.065 kb on - strandat 640.065 kb on - strandat 640.071 kb on + strandat 640.079 kb on - strandat 640.079 kb on - strandat 640.079 kb on - strandat 640.079 kb on - strandat 640.079 kb on - strandat 640.125 kb on - strandat 640.204 kb on + strandat 640.204 kb on + strandat 640.204 kb on + strandat 640.204 kb on + strandat 640.209 kb on + strandat 640.212 kb on - strandat 640.212 kb on - strandat 640.212 kb on - strandat 640.224 kb on - strandat 640.269 kb on + strandat 640.271 kb on + strandat 640.281 kb on + strandat 640.281 kb on + strandat 640.289 kb on - strandat 640.327 kb on - strand, within BBR_RS12880at 640.379 kb on - strand, within BBR_RS12880at 640.394 kb on + strand, within BBR_RS12880at 640.398 kb on - strand, within BBR_RS12880at 640.413 kb on + strand, within BBR_RS12880at 640.421 kb on - strand, within BBR_RS12880at 640.463 kb on + strand, within BBR_RS12880at 640.483 kb on - strand, within BBR_RS12880at 640.527 kb on + strand, within BBR_RS12880at 640.563 kb on + strand, within BBR_RS12880at 640.585 kb on + strand, within BBR_RS12880at 640.622 kb on + strand, within BBR_RS12880at 640.622 kb on + strand, within BBR_RS12880at 640.635 kb on + strand, within BBR_RS12880at 640.643 kb on - strand, within BBR_RS12880at 640.673 kb on + strand, within BBR_RS12880at 640.678 kb on + strand, within BBR_RS12880at 640.686 kb on + strand, within BBR_RS12880at 640.696 kb on - strand, within BBR_RS12880at 640.710 kb on + strand, within BBR_RS12880at 640.717 kb on + strand, within BBR_RS12880at 640.718 kb on - strand, within BBR_RS12880at 640.722 kb on + strand, within BBR_RS12880at 640.747 kb on - strand, within BBR_RS12880at 640.761 kb on - strand, within BBR_RS12880at 640.787 kb on + strand, within BBR_RS12880at 640.787 kb on + strand, within BBR_RS12880at 640.808 kb on - strand, within BBR_RS12880at 640.809 kb on + strand, within BBR_RS12880at 640.828 kb on + strand, within BBR_RS12880at 640.882 kb on - strandat 640.940 kb on - strandat 640.988 kb on + strandat 640.996 kb on - strandat 641.038 kb on - strandat 641.050 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; mouse3; day4
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639,222 + BBR_RS12875 0.24 +0.8
639,241 + BBR_RS12875 0.26 -1.7
639,253 + BBR_RS12875 0.27 +0.6
639,253 + BBR_RS12875 0.27 -2.9
639,266 + BBR_RS12875 0.28 +0.2
639,290 - BBR_RS12875 0.30 -1.6
639,302 + BBR_RS12875 0.31 +1.4
639,303 + BBR_RS12875 0.31 -1.5
639,312 + BBR_RS12875 0.32 +0.2
639,320 - BBR_RS12875 0.32 +2.8
639,320 - BBR_RS12875 0.32 +0.7
639,410 + BBR_RS12875 0.40 -0.1
639,454 - BBR_RS12875 0.44 -1.3
639,504 - BBR_RS12875 0.48 +1.0
639,533 + BBR_RS12875 0.51 +0.7
639,571 + BBR_RS12875 0.54 -1.1
639,571 + BBR_RS12875 0.54 +2.0
639,579 - BBR_RS12875 0.55 -1.9
639,579 - BBR_RS12875 0.55 -0.9
639,579 - BBR_RS12875 0.55 +0.7
639,581 + BBR_RS12875 0.55 +0.4
639,593 - BBR_RS12875 0.56 +1.0
639,606 + BBR_RS12875 0.57 +0.9
639,629 - BBR_RS12875 0.59 -0.6
639,630 - BBR_RS12875 0.59 +0.5
639,635 - BBR_RS12875 0.59 +0.4
639,651 - BBR_RS12875 0.61 +0.4
639,663 + BBR_RS12875 0.62 -0.4
639,671 - BBR_RS12875 0.62 +0.6
639,677 + BBR_RS12875 0.63 -0.2
639,677 + BBR_RS12875 0.63 +0.6
639,677 + BBR_RS12875 0.63 +2.2
639,678 - BBR_RS12875 0.63 +1.8
639,678 - BBR_RS12875 0.63 -0.5
639,685 - BBR_RS12875 0.64 +1.0
639,720 - BBR_RS12875 0.67 -2.7
639,722 - BBR_RS12875 0.67 +1.6
639,731 + BBR_RS12875 0.68 -1.3
639,756 + BBR_RS12875 0.70 -2.2
639,756 + BBR_RS12875 0.70 +0.9
639,756 + BBR_RS12875 0.70 -0.8
639,757 + BBR_RS12875 0.70 -0.4
639,773 + BBR_RS12875 0.71 +0.0
639,773 + BBR_RS12875 0.71 +2.0
639,779 + BBR_RS12875 0.72 -0.7
639,787 - BBR_RS12875 0.72 +0.4
639,804 + BBR_RS12875 0.74 +1.8
639,858 + BBR_RS12875 0.79 +0.9
639,882 + BBR_RS12875 0.81 +0.5
639,890 - BBR_RS12875 0.81 -0.3
639,892 + BBR_RS12875 0.81 +0.7
639,892 + BBR_RS12875 0.81 -0.5
639,894 + BBR_RS12875 0.82 +0.5
639,900 - BBR_RS12875 0.82 -0.7
639,943 + BBR_RS12875 0.86 +1.4
639,956 - BBR_RS12875 0.87 +2.0
639,975 + BBR_RS12875 0.89 -0.5
640,029 - +4.2
640,065 - +3.4
640,065 - +1.2
640,071 + -1.2
640,079 - -1.1
640,079 - +1.2
640,079 - +1.0
640,079 - -2.5
640,079 - +2.0
640,125 - -1.8
640,204 + -1.2
640,204 + +2.4
640,204 + +3.0
640,204 + -0.3
640,209 + -0.4
640,212 - +0.3
640,212 - +0.6
640,212 - -0.9
640,224 - -1.7
640,269 + -2.2
640,271 + -2.9
640,281 + -2.0
640,281 + -0.9
640,289 - -1.1
640,327 - BBR_RS12880 0.15 -2.7
640,379 - BBR_RS12880 0.22 -2.0
640,394 + BBR_RS12880 0.24 -1.9
640,398 - BBR_RS12880 0.25 -2.5
640,413 + BBR_RS12880 0.27 -2.8
640,421 - BBR_RS12880 0.28 -1.9
640,463 + BBR_RS12880 0.34 -2.9
640,483 - BBR_RS12880 0.37 -2.8
640,527 + BBR_RS12880 0.43 -2.3
640,563 + BBR_RS12880 0.48 -0.9
640,585 + BBR_RS12880 0.51 -2.2
640,622 + BBR_RS12880 0.56 -1.2
640,622 + BBR_RS12880 0.56 -2.6
640,635 + BBR_RS12880 0.58 -1.3
640,643 - BBR_RS12880 0.59 -3.2
640,673 + BBR_RS12880 0.63 -2.4
640,678 + BBR_RS12880 0.64 -1.0
640,686 + BBR_RS12880 0.65 -4.2
640,696 - BBR_RS12880 0.66 +0.2
640,710 + BBR_RS12880 0.68 -2.3
640,717 + BBR_RS12880 0.69 -2.1
640,718 - BBR_RS12880 0.69 -1.9
640,722 + BBR_RS12880 0.70 -4.0
640,747 - BBR_RS12880 0.73 -2.8
640,761 - BBR_RS12880 0.75 -2.7
640,787 + BBR_RS12880 0.79 -2.6
640,787 + BBR_RS12880 0.79 -1.6
640,808 - BBR_RS12880 0.82 -1.2
640,809 + BBR_RS12880 0.82 -2.6
640,828 + BBR_RS12880 0.85 -2.3
640,882 - -1.7
640,940 - +1.2
640,988 + +1.8
640,996 - -0.1
641,038 - -1.9
641,050 - -2.5

Or see this region's nucleotide sequence