Experiment: diet=StandardDiet; sample=FecalPellet; mouse3; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS11235 and BBR_RS11240 are separated by 244 nucleotides BBR_RS11240 and BBR_RS11245 are separated by 322 nucleotides
BBR_RS11235: BBR_RS11235 - hypothetical protein, at 267,061 to 267,408
_RS11235
BBR_RS11240: BBR_RS11240 - GtrA family protein, at 267,653 to 268,189
_RS11240
BBR_RS11245: BBR_RS11245 - MFS transporter, at 268,512 to 269,963
_RS11245
Position (kb) 267
268
269 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 266.686 kb on - strand at 266.778 kb on + strand at 266.778 kb on + strand at 266.787 kb on + strand at 266.787 kb on + strand at 266.871 kb on - strand at 266.879 kb on + strand at 266.880 kb on + strand at 266.888 kb on - strand at 266.900 kb on + strand at 266.913 kb on + strand at 266.976 kb on + strand at 267.003 kb on + strand at 267.007 kb on + strand at 267.007 kb on + strand at 267.007 kb on + strand at 267.013 kb on + strand at 267.013 kb on + strand at 267.013 kb on + strand at 267.015 kb on - strand at 267.015 kb on - strand at 267.021 kb on + strand at 267.021 kb on - strand at 267.021 kb on - strand at 267.040 kb on - strand at 267.040 kb on - strand at 267.043 kb on - strand at 267.050 kb on + strand at 267.051 kb on + strand at 267.075 kb on + strand at 267.076 kb on + strand at 267.076 kb on + strand at 267.116 kb on + strand, within BBR_RS11235 at 267.153 kb on - strand, within BBR_RS11235 at 267.163 kb on - strand, within BBR_RS11235 at 267.178 kb on + strand, within BBR_RS11235 at 267.190 kb on + strand, within BBR_RS11235 at 267.212 kb on + strand, within BBR_RS11235 at 267.220 kb on - strand, within BBR_RS11235 at 267.221 kb on - strand, within BBR_RS11235 at 267.238 kb on - strand, within BBR_RS11235 at 267.238 kb on - strand, within BBR_RS11235 at 267.241 kb on - strand, within BBR_RS11235 at 267.299 kb on + strand, within BBR_RS11235 at 267.299 kb on + strand, within BBR_RS11235 at 267.305 kb on + strand, within BBR_RS11235 at 267.307 kb on - strand, within BBR_RS11235 at 267.308 kb on - strand, within BBR_RS11235 at 267.315 kb on + strand, within BBR_RS11235 at 267.318 kb on - strand, within BBR_RS11235 at 267.324 kb on + strand, within BBR_RS11235 at 267.329 kb on + strand, within BBR_RS11235 at 267.329 kb on + strand, within BBR_RS11235 at 267.334 kb on + strand, within BBR_RS11235 at 267.342 kb on - strand, within BBR_RS11235 at 267.342 kb on - strand, within BBR_RS11235 at 267.342 kb on - strand, within BBR_RS11235 at 267.353 kb on + strand, within BBR_RS11235 at 267.363 kb on + strand, within BBR_RS11235 at 267.363 kb on + strand, within BBR_RS11235 at 267.363 kb on + strand, within BBR_RS11235 at 267.363 kb on + strand, within BBR_RS11235 at 267.363 kb on + strand, within BBR_RS11235 at 267.363 kb on + strand, within BBR_RS11235 at 267.368 kb on + strand, within BBR_RS11235 at 267.371 kb on - strand, within BBR_RS11235 at 267.371 kb on - strand, within BBR_RS11235 at 267.371 kb on - strand, within BBR_RS11235 at 267.371 kb on - strand, within BBR_RS11235 at 267.371 kb on - strand, within BBR_RS11235 at 267.371 kb on - strand, within BBR_RS11235 at 267.376 kb on - strand at 267.376 kb on - strand at 267.382 kb on + strand at 267.390 kb on - strand at 267.391 kb on + strand at 267.412 kb on - strand at 267.455 kb on + strand at 267.458 kb on + strand at 267.464 kb on - strand at 267.468 kb on + strand at 267.468 kb on + strand at 267.468 kb on + strand at 267.468 kb on + strand at 267.468 kb on + strand at 267.468 kb on + strand at 267.468 kb on + strand at 267.476 kb on - strand at 267.508 kb on + strand at 267.508 kb on + strand at 267.515 kb on - strand at 267.516 kb on - strand at 267.516 kb on - strand at 267.516 kb on - strand at 267.516 kb on - strand at 267.518 kb on + strand at 267.537 kb on - strand at 267.540 kb on - strand at 267.545 kb on - strand at 267.568 kb on + strand at 267.590 kb on - strand at 267.590 kb on - strand at 267.595 kb on + strand at 267.602 kb on - strand at 267.602 kb on - strand at 267.605 kb on + strand at 268.067 kb on + strand, within BBR_RS11240 at 268.067 kb on + strand, within BBR_RS11240 at 268.095 kb on + strand, within BBR_RS11240 at 268.098 kb on + strand, within BBR_RS11240 at 268.155 kb on + strand at 268.155 kb on + strand at 268.160 kb on + strand at 268.168 kb on + strand at 268.168 kb on + strand at 268.168 kb on + strand at 268.175 kb on - strand at 268.176 kb on - strand at 268.176 kb on - strand at 268.214 kb on + strand at 268.239 kb on + strand at 268.247 kb on - strand at 268.300 kb on + strand at 268.363 kb on + strand at 268.371 kb on - strand at 268.371 kb on - strand at 268.429 kb on + strand at 268.440 kb on + strand at 268.445 kb on - strand at 268.457 kb on - strand at 268.488 kb on + strand at 268.496 kb on - strand at 268.505 kb on - strand at 268.509 kb on + strand at 268.509 kb on + strand at 268.511 kb on - strand at 268.517 kb on - strand at 268.519 kb on - strand at 268.519 kb on - strand at 268.532 kb on + strand at 268.532 kb on + strand at 268.552 kb on + strand at 268.560 kb on - strand at 268.560 kb on - strand at 268.560 kb on - strand at 268.562 kb on + strand at 268.562 kb on + strand at 268.570 kb on - strand at 268.570 kb on - strand at 268.577 kb on - strand at 268.607 kb on - strand at 268.608 kb on + strand at 268.614 kb on - strand at 268.614 kb on - strand at 268.616 kb on + strand at 268.616 kb on + strand at 268.636 kb on + strand at 268.655 kb on + strand at 268.659 kb on + strand, within BBR_RS11245 at 268.665 kb on + strand, within BBR_RS11245 at 268.665 kb on + strand, within BBR_RS11245 at 268.681 kb on - strand, within BBR_RS11245 at 268.682 kb on + strand, within BBR_RS11245 at 268.699 kb on + strand, within BBR_RS11245 at 268.704 kb on + strand, within BBR_RS11245 at 268.712 kb on - strand, within BBR_RS11245 at 268.712 kb on - strand, within BBR_RS11245 at 268.719 kb on - strand, within BBR_RS11245 at 268.723 kb on + strand, within BBR_RS11245 at 268.725 kb on - strand, within BBR_RS11245 at 268.746 kb on + strand, within BBR_RS11245 at 268.750 kb on + strand, within BBR_RS11245 at 268.750 kb on + strand, within BBR_RS11245 at 268.774 kb on - strand, within BBR_RS11245 at 268.783 kb on + strand, within BBR_RS11245 at 268.787 kb on + strand, within BBR_RS11245 at 268.791 kb on - strand, within BBR_RS11245 at 268.812 kb on - strand, within BBR_RS11245 at 268.869 kb on - strand, within BBR_RS11245 at 268.879 kb on - strand, within BBR_RS11245 at 268.884 kb on + strand, within BBR_RS11245 at 268.891 kb on - strand, within BBR_RS11245 at 268.893 kb on + strand, within BBR_RS11245 at 268.893 kb on + strand, within BBR_RS11245 at 268.926 kb on + strand, within BBR_RS11245 at 268.926 kb on + strand, within BBR_RS11245 at 268.929 kb on + strand, within BBR_RS11245 at 268.932 kb on - strand, within BBR_RS11245 at 268.932 kb on - strand, within BBR_RS11245 at 268.932 kb on - strand, within BBR_RS11245 at 268.934 kb on - strand, within BBR_RS11245 at 268.939 kb on - strand, within BBR_RS11245 at 268.944 kb on - strand, within BBR_RS11245 at 268.949 kb on + strand, within BBR_RS11245 at 268.951 kb on + strand, within BBR_RS11245 at 268.971 kb on + strand, within BBR_RS11245 at 268.971 kb on + strand, within BBR_RS11245 at 268.971 kb on + strand, within BBR_RS11245 at 268.979 kb on - strand, within BBR_RS11245 at 268.979 kb on - strand, within BBR_RS11245 at 268.979 kb on - strand, within BBR_RS11245 at 268.979 kb on - strand, within BBR_RS11245 at 268.981 kb on + strand, within BBR_RS11245 at 268.986 kb on - strand, within BBR_RS11245 at 268.996 kb on - strand, within BBR_RS11245 at 269.022 kb on + strand, within BBR_RS11245 at 269.023 kb on - strand, within BBR_RS11245 at 269.024 kb on + strand, within BBR_RS11245 at 269.032 kb on - strand, within BBR_RS11245 at 269.054 kb on + strand, within BBR_RS11245 at 269.054 kb on + strand, within BBR_RS11245 at 269.056 kb on - strand, within BBR_RS11245 at 269.062 kb on - strand, within BBR_RS11245 at 269.079 kb on + strand, within BBR_RS11245 at 269.097 kb on + strand, within BBR_RS11245 at 269.097 kb on + strand, within BBR_RS11245 at 269.105 kb on + strand, within BBR_RS11245 at 269.163 kb on - strand, within BBR_RS11245 at 269.168 kb on + strand, within BBR_RS11245 at 269.169 kb on + strand, within BBR_RS11245 at 269.177 kb on - strand, within BBR_RS11245
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; mouse3; day4 remove 266,686 - -0.3 266,778 + -1.4 266,778 + -1.3 266,787 + +0.3 266,787 + +2.9 266,871 - +0.3 266,879 + -0.6 266,880 + +0.3 266,888 - +2.4 266,900 + +2.5 266,913 + -0.6 266,976 + -0.6 267,003 + +2.6 267,007 + +3.0 267,007 + -1.6 267,007 + +0.2 267,013 + -0.3 267,013 + +1.1 267,013 + -0.1 267,015 - -2.1 267,015 - +2.5 267,021 + +1.4 267,021 - +0.1 267,021 - +0.1 267,040 - +0.3 267,040 - +0.5 267,043 - -0.2 267,050 + +1.4 267,051 + -2.5 267,075 + -0.9 267,076 + +1.4 267,076 + +1.2 267,116 + BBR_RS11235 0.16 -1.5 267,153 - BBR_RS11235 0.26 +1.6 267,163 - BBR_RS11235 0.29 -0.6 267,178 + BBR_RS11235 0.34 -1.2 267,190 + BBR_RS11235 0.37 -1.5 267,212 + BBR_RS11235 0.43 -1.2 267,220 - BBR_RS11235 0.46 -0.5 267,221 - BBR_RS11235 0.46 +2.6 267,238 - BBR_RS11235 0.51 +2.4 267,238 - BBR_RS11235 0.51 +2.6 267,241 - BBR_RS11235 0.52 -0.4 267,299 + BBR_RS11235 0.68 +0.8 267,299 + BBR_RS11235 0.68 +0.4 267,305 + BBR_RS11235 0.70 -0.6 267,307 - BBR_RS11235 0.71 -0.3 267,308 - BBR_RS11235 0.71 -1.1 267,315 + BBR_RS11235 0.73 +0.2 267,318 - BBR_RS11235 0.74 +1.3 267,324 + BBR_RS11235 0.76 -0.2 267,329 + BBR_RS11235 0.77 -0.3 267,329 + BBR_RS11235 0.77 +0.4 267,334 + BBR_RS11235 0.78 +0.8 267,342 - BBR_RS11235 0.81 -1.8 267,342 - BBR_RS11235 0.81 -1.2 267,342 - BBR_RS11235 0.81 -2.5 267,353 + BBR_RS11235 0.84 -0.0 267,363 + BBR_RS11235 0.87 -2.3 267,363 + BBR_RS11235 0.87 -1.4 267,363 + BBR_RS11235 0.87 -0.9 267,363 + BBR_RS11235 0.87 +0.4 267,363 + BBR_RS11235 0.87 +0.7 267,363 + BBR_RS11235 0.87 +1.0 267,368 + BBR_RS11235 0.88 +1.4 267,371 - BBR_RS11235 0.89 -1.1 267,371 - BBR_RS11235 0.89 +0.9 267,371 - BBR_RS11235 0.89 -0.6 267,371 - BBR_RS11235 0.89 -1.9 267,371 - BBR_RS11235 0.89 -1.3 267,371 - BBR_RS11235 0.89 +2.0 267,376 - -1.3 267,376 - -1.5 267,382 + -1.6 267,390 - -1.9 267,391 + +2.2 267,412 - -0.5 267,455 + +1.7 267,458 + -1.7 267,464 - -2.3 267,468 + -1.4 267,468 + -0.4 267,468 + +2.1 267,468 + -0.3 267,468 + -0.8 267,468 + -1.9 267,468 + +0.9 267,476 - -2.0 267,508 + -1.3 267,508 + -2.0 267,515 - -0.3 267,516 - +1.5 267,516 - -0.7 267,516 - -1.7 267,516 - -1.0 267,518 + -0.1 267,537 - +0.7 267,540 - -2.3 267,545 - +1.2 267,568 + -2.5 267,590 - +2.2 267,590 - -1.1 267,595 + +2.6 267,602 - -0.2 267,602 - +1.1 267,605 + +0.1 268,067 + BBR_RS11240 0.77 -2.4 268,067 + BBR_RS11240 0.77 -1.8 268,095 + BBR_RS11240 0.82 -2.3 268,098 + BBR_RS11240 0.83 -2.4 268,155 + -3.1 268,155 + -1.9 268,160 + +1.9 268,168 + -1.2 268,168 + -1.8 268,168 + -1.8 268,175 - -0.9 268,176 - -2.5 268,176 - -1.3 268,214 + -0.6 268,239 + +0.2 268,247 - -1.9 268,300 + +0.6 268,363 + +1.1 268,371 - -2.2 268,371 - -0.4 268,429 + +0.8 268,440 + +1.1 268,445 - +3.2 268,457 - -2.1 268,488 + +1.2 268,496 - -1.4 268,505 - -1.7 268,509 + -3.2 268,509 + -2.0 268,511 - -1.7 268,517 - +0.8 268,519 - +2.2 268,519 - -2.3 268,532 + +2.2 268,532 + +2.4 268,552 + +0.1 268,560 - +0.8 268,560 - -1.3 268,560 - +0.7 268,562 + -2.4 268,562 + +2.0 268,570 - -3.1 268,570 - -1.5 268,577 - -0.4 268,607 - +0.1 268,608 + +0.9 268,614 - -0.5 268,614 - -1.0 268,616 + -1.1 268,616 + +1.0 268,636 + -1.5 268,655 + -3.1 268,659 + BBR_RS11245 0.10 -0.8 268,665 + BBR_RS11245 0.11 -2.3 268,665 + BBR_RS11245 0.11 -0.8 268,681 - BBR_RS11245 0.12 -1.0 268,682 + BBR_RS11245 0.12 -1.2 268,699 + BBR_RS11245 0.13 -2.8 268,704 + BBR_RS11245 0.13 -0.0 268,712 - BBR_RS11245 0.14 -0.9 268,712 - BBR_RS11245 0.14 -1.8 268,719 - BBR_RS11245 0.14 -2.6 268,723 + BBR_RS11245 0.15 -2.9 268,725 - BBR_RS11245 0.15 -2.1 268,746 + BBR_RS11245 0.16 -0.5 268,750 + BBR_RS11245 0.16 -2.8 268,750 + BBR_RS11245 0.16 +0.0 268,774 - BBR_RS11245 0.18 -2.2 268,783 + BBR_RS11245 0.19 -0.6 268,787 + BBR_RS11245 0.19 -1.9 268,791 - BBR_RS11245 0.19 +1.6 268,812 - BBR_RS11245 0.21 -2.6 268,869 - BBR_RS11245 0.25 -0.3 268,879 - BBR_RS11245 0.25 -3.6 268,884 + BBR_RS11245 0.26 +1.3 268,891 - BBR_RS11245 0.26 -1.3 268,893 + BBR_RS11245 0.26 -2.8 268,893 + BBR_RS11245 0.26 -0.8 268,926 + BBR_RS11245 0.29 -1.9 268,926 + BBR_RS11245 0.29 -1.9 268,929 + BBR_RS11245 0.29 -3.2 268,932 - BBR_RS11245 0.29 -2.9 268,932 - BBR_RS11245 0.29 -1.9 268,932 - BBR_RS11245 0.29 -0.8 268,934 - BBR_RS11245 0.29 -0.7 268,939 - BBR_RS11245 0.29 +0.0 268,944 - BBR_RS11245 0.30 -2.8 268,949 + BBR_RS11245 0.30 -2.2 268,951 + BBR_RS11245 0.30 -1.1 268,971 + BBR_RS11245 0.32 -2.5 268,971 + BBR_RS11245 0.32 -1.6 268,971 + BBR_RS11245 0.32 -2.7 268,979 - BBR_RS11245 0.32 -3.5 268,979 - BBR_RS11245 0.32 +0.1 268,979 - BBR_RS11245 0.32 -1.7 268,979 - BBR_RS11245 0.32 +1.2 268,981 + BBR_RS11245 0.32 +0.6 268,986 - BBR_RS11245 0.33 -0.4 268,996 - BBR_RS11245 0.33 +0.4 269,022 + BBR_RS11245 0.35 -1.3 269,023 - BBR_RS11245 0.35 -2.9 269,024 + BBR_RS11245 0.35 -1.0 269,032 - BBR_RS11245 0.36 -3.7 269,054 + BBR_RS11245 0.37 -2.2 269,054 + BBR_RS11245 0.37 -2.3 269,056 - BBR_RS11245 0.37 -0.9 269,062 - BBR_RS11245 0.38 -0.7 269,079 + BBR_RS11245 0.39 -0.9 269,097 + BBR_RS11245 0.40 -2.6 269,097 + BBR_RS11245 0.40 -1.1 269,105 + BBR_RS11245 0.41 -3.0 269,163 - BBR_RS11245 0.45 +0.5 269,168 + BBR_RS11245 0.45 -0.1 269,169 + BBR_RS11245 0.45 -2.1 269,177 - BBR_RS11245 0.46 -2.0
Or see this region's nucleotide sequence