Experiment: Pyruvate (fermenting) with Na2S as sulfur source with Casaminos 0.2%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0302 and DVU0303 are separated by 347 nucleotides DVU0303 and DVU0304 are separated by 30 nucleotides DVU0304 and fd II are separated by 129 nucleotides fd II and DVU0306 are separated by 93 nucleotides
DVU0302: DVU0302 - chemotaxis protein CheX, putative (TIGR), at 348,841 to 349,308
DVU0302
DVU0303: DVU0303 - hypothetical protein (TIGR), at 349,656 to 349,973
DVU0303
DVU0304: DVU0304 - hypothetical protein (TIGR), at 350,004 to 350,285
DVU0304
DVU0305: fd II - ferredoxin II (Sean Caffrey), at 350,415 to 350,609
fd II
DVU0306: DVU0306 - hypothetical protein (TIGR), at 350,703 to 351,320
DVU0306
Position (kb) 350
351 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 349.059 kb on - strand, within DVU0302 at 349.213 kb on - strand, within DVU0302 at 349.213 kb on - strand, within DVU0302 at 349.235 kb on - strand, within DVU0302 at 349.247 kb on - strand, within DVU0302 at 349.306 kb on + strand at 349.365 kb on + strand at 349.369 kb on - strand at 349.373 kb on + strand at 349.373 kb on - strand at 349.403 kb on + strand at 349.411 kb on + strand at 349.419 kb on - strand at 349.426 kb on - strand at 349.436 kb on + strand at 349.463 kb on - strand at 349.480 kb on + strand at 349.500 kb on - strand at 349.579 kb on - strand at 349.579 kb on - strand at 349.605 kb on + strand at 349.618 kb on - strand at 349.622 kb on + strand at 349.639 kb on + strand at 349.805 kb on + strand, within DVU0303 at 349.819 kb on - strand, within DVU0303 at 349.829 kb on + strand, within DVU0303 at 349.882 kb on - strand, within DVU0303 at 349.884 kb on - strand, within DVU0303 at 349.927 kb on + strand, within DVU0303 at 349.944 kb on - strand at 349.946 kb on + strand at 350.001 kb on + strand at 350.001 kb on + strand at 350.044 kb on - strand, within DVU0304 at 350.077 kb on + strand, within DVU0304 at 350.079 kb on - strand, within DVU0304 at 350.109 kb on - strand, within DVU0304 at 350.118 kb on + strand, within DVU0304 at 350.187 kb on - strand, within DVU0304 at 350.201 kb on + strand, within DVU0304 at 350.208 kb on + strand, within DVU0304 at 350.215 kb on + strand, within DVU0304 at 350.218 kb on - strand, within DVU0304 at 350.223 kb on - strand, within DVU0304 at 350.223 kb on - strand, within DVU0304 at 350.223 kb on - strand, within DVU0304 at 350.223 kb on - strand, within DVU0304 at 350.223 kb on - strand, within DVU0304 at 350.228 kb on - strand, within DVU0304 at 350.264 kb on - strand at 350.266 kb on + strand at 350.276 kb on - strand at 350.455 kb on - strand, within fd II at 350.479 kb on + strand, within fd II at 350.502 kb on - strand, within fd II at 350.507 kb on - strand, within fd II at 350.640 kb on + strand at 350.653 kb on - strand at 350.716 kb on + strand at 350.788 kb on - strand, within DVU0306 at 350.813 kb on - strand, within DVU0306 at 350.831 kb on + strand, within DVU0306 at 350.854 kb on - strand, within DVU0306 at 350.989 kb on - strand, within DVU0306 at 351.067 kb on - strand, within DVU0306 at 351.114 kb on - strand, within DVU0306 at 351.174 kb on - strand, within DVU0306 at 351.210 kb on + strand, within DVU0306 at 351.230 kb on + strand, within DVU0306 at 351.254 kb on - strand, within DVU0306
Per-strain Table
Position Strand Gene LocusTag Fraction Pyruvate (fermenting) with Na2S as sulfur source with Casaminos 0.2% remove 349,059 - DVU0302 0.47 -0.5 349,213 - DVU0302 0.79 -0.2 349,213 - DVU0302 0.79 +0.1 349,235 - DVU0302 0.84 +0.2 349,247 - DVU0302 0.87 +0.5 349,306 + +1.3 349,365 + +0.4 349,369 - +2.9 349,373 + +0.0 349,373 - +0.8 349,403 + +0.4 349,411 + +0.9 349,419 - -0.2 349,426 - +0.1 349,436 + -0.1 349,463 - +0.1 349,480 + +0.2 349,500 - -0.1 349,579 - +0.3 349,579 - +0.2 349,605 + -0.3 349,618 - -1.3 349,622 + -0.6 349,639 + -0.1 349,805 + DVU0303 0.47 -0.6 349,819 - DVU0303 0.51 +0.4 349,829 + DVU0303 0.54 -0.1 349,882 - DVU0303 0.71 -0.1 349,884 - DVU0303 0.72 +0.8 349,927 + DVU0303 0.85 +0.3 349,944 - -0.2 349,946 + +0.1 350,001 + +1.3 350,001 + -0.1 350,044 - DVU0304 0.14 +0.5 350,077 + DVU0304 0.26 +1.1 350,079 - DVU0304 0.27 -1.4 350,109 - DVU0304 0.37 +2.0 350,118 + DVU0304 0.40 +0.1 350,187 - DVU0304 0.65 -1.2 350,201 + DVU0304 0.70 +0.5 350,208 + DVU0304 0.72 +2.9 350,215 + DVU0304 0.75 +0.9 350,218 - DVU0304 0.76 -0.1 350,223 - DVU0304 0.78 +0.1 350,223 - DVU0304 0.78 -0.0 350,223 - DVU0304 0.78 -0.2 350,223 - DVU0304 0.78 +0.2 350,223 - DVU0304 0.78 -0.2 350,228 - DVU0304 0.79 +1.5 350,264 - -0.3 350,266 + -0.3 350,276 - -0.5 350,455 - fd II DVU0305 0.21 -3.2 350,479 + fd II DVU0305 0.33 -0.5 350,502 - fd II DVU0305 0.45 -0.2 350,507 - fd II DVU0305 0.47 -0.3 350,640 + +1.0 350,653 - +0.1 350,716 + -0.1 350,788 - DVU0306 0.14 -0.1 350,813 - DVU0306 0.18 +0.3 350,831 + DVU0306 0.21 -0.3 350,854 - DVU0306 0.24 -2.6 350,989 - DVU0306 0.46 -0.2 351,067 - DVU0306 0.59 -0.2 351,114 - DVU0306 0.67 -0.2 351,174 - DVU0306 0.76 -0.6 351,210 + DVU0306 0.82 -0.3 351,230 + DVU0306 0.85 -0.3 351,254 - DVU0306 0.89 -0.0
Or see this region's nucleotide sequence