Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU3368
Experiment: Pyruvate (fermenting) with Na2S as sulfur source with Casaminos 0.2%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Pyruvate (fermenting) with Na2S as sulfur source with Casaminos 0.2% |
---|---|---|---|---|---|
remove | |||||
3,540,820 | + | -2.1 | |||
3,540,820 | + | +0.2 | |||
3,540,820 | + | -1.9 | |||
3,540,828 | - | +0.2 | |||
3,540,894 | - | DVU3369 | 0.12 | -0.4 | |
3,540,899 | + | DVU3369 | 0.12 | -1.3 | |
3,540,933 | + | DVU3369 | 0.17 | -1.6 | |
3,540,941 | - | DVU3369 | 0.18 | +0.0 | |
3,541,007 | + | DVU3369 | 0.26 | -1.0 | |
3,541,090 | - | DVU3369 | 0.37 | -1.2 | |
3,541,240 | - | DVU3369 | 0.56 | -2.6 | |
3,541,267 | - | DVU3369 | 0.59 | -1.3 | |
3,541,267 | - | DVU3369 | 0.59 | +0.2 | |
3,541,280 | - | DVU3369 | 0.61 | -2.6 | |
3,541,304 | + | DVU3369 | 0.64 | -1.3 | |
3,541,317 | + | DVU3369 | 0.65 | +0.8 | |
3,541,331 | - | DVU3369 | 0.67 | -0.2 | |
3,541,543 | + | -1.3 | |||
3,541,543 | + | -0.2 | |||
3,541,582 | + | +0.8 | |||
3,541,605 | - | +0.0 | |||
3,541,630 | - | -0.3 | |||
3,541,646 | + | +0.0 | |||
3,541,658 | + | +0.2 | |||
3,541,661 | - | +0.9 | |||
3,541,668 | + | -0.4 | |||
3,541,676 | - | -1.0 |
Or see this region's nucleotide sequence