Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU3011

Experiment: Pyruvate (fermenting) with Na2S as sulfur source with Casaminos 0.2%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pyruvate (fermenting) with Na2S as sulfur source with Casaminos 0.2%
3,123,170	+	lpsC	DVU3010	0.18	-0.7
3,123,200	+	lpsC	DVU3010	0.21	-0.7
3,123,213	-	lpsC	DVU3010	0.22	+0.8
3,123,237	-	lpsC	DVU3010	0.24	-0.4
3,123,320	+	lpsC	DVU3010	0.31	-0.5
3,123,444	-	lpsC	DVU3010	0.41	+1.3
3,123,519	+	lpsC	DVU3010	0.48	+0.0
3,123,576	+	lpsC	DVU3010	0.53	-0.4
3,123,584	-	lpsC	DVU3010	0.53	-0.5
3,123,628	-	lpsC	DVU3010	0.57	-0.4
3,123,633	+	lpsC	DVU3010	0.57	-1.3
3,123,642	-	lpsC	DVU3010	0.58	-0.9
3,123,642	-	lpsC	DVU3010	0.58	-0.3
3,123,657	-	lpsC	DVU3010	0.59	+0.5
3,123,695	+	lpsC	DVU3010	0.63	-1.2
3,123,702	+	lpsC	DVU3010	0.63	-0.1
3,123,853	-	lpsC	DVU3010	0.76	+0.0
3,123,860	-	lpsC	DVU3010	0.77	-0.6
3,123,860	-	lpsC	DVU3010	0.77	-0.3
3,123,880	-	lpsC	DVU3010	0.78	+0.0
3,123,880	-	lpsC	DVU3010	0.78	-0.8
3,123,966	+	lpsC	DVU3010	0.86	-0.2
3,123,993	+	lpsC	DVU3010	0.88	-0.5
3,124,048	-				-0.7
3,124,070	+				-1.0
3,124,120	-				+0.1
3,124,129	+				-0.1
3,124,129	+				-0.4
3,124,129	+				-2.0
3,124,129	+				+0.1
3,124,137	-				+0.5
3,124,137	-				-0.2
3,124,137	-				-0.1
3,124,137	-				-0.8
3,124,325	-		DVU3011	0.23	-0.3
3,124,338	-		DVU3011	0.25	-1.7
3,124,395	-		DVU3011	0.32	-1.0
3,124,399	+		DVU3011	0.33	+0.2
3,124,419	-		DVU3011	0.35	-0.6
3,124,434	-		DVU3011	0.37	-0.4
3,124,435	+		DVU3011	0.37	-0.6
3,124,447	+		DVU3011	0.39	+0.2
3,124,479	+		DVU3011	0.43	-1.5
3,124,479	+		DVU3011	0.43	+0.3
3,124,503	+		DVU3011	0.46	-0.5
3,124,503	+		DVU3011	0.46	-0.6
3,124,505	+		DVU3011	0.46	+0.5
3,124,541	+		DVU3011	0.51	-0.3
3,124,553	+		DVU3011	0.52	-0.2
3,124,650	+		DVU3011	0.64	+0.3
3,124,660	-		DVU3011	0.66	+0.0
3,124,718	-		DVU3011	0.73	-0.2
3,124,735	+		DVU3011	0.75	-1.1
3,124,735	+		DVU3011	0.75	-0.0
3,124,735	+		DVU3011	0.75	+1.3
3,124,735	+		DVU3011	0.75	+0.8
3,124,735	+		DVU3011	0.75	+0.3
3,124,735	+		DVU3011	0.75	-0.2
3,124,735	+		DVU3011	0.75	-1.2
3,124,745	-		DVU3011	0.76	-0.2
3,124,853	-		DVU3011	0.90	-1.8
3,124,995	+				+1.0
3,125,141	+				+0.5
3,125,170	+				+0.1
3,125,171	-				+1.3
3,125,174	+				-0.3
3,125,182	-				-1.3
3,125,215	-		DVU3012	0.10	-0.2
3,125,218	-		DVU3012	0.10	-0.0
3,125,238	+		DVU3012	0.11	-0.2
3,125,253	+		DVU3012	0.12	+2.3
3,125,295	+		DVU3012	0.14	-0.1
3,125,318	-		DVU3012	0.16	-0.0
3,125,322	+		DVU3012	0.16	-0.5
3,125,378	+		DVU3012	0.19	-0.2
3,125,385	-		DVU3012	0.20	-0.4
3,125,456	+		DVU3012	0.23	-0.1
3,125,470	-		DVU3012	0.24	-1.9
3,125,487	+		DVU3012	0.25	+0.1
3,125,504	+		DVU3012	0.26	-0.2
3,125,560	+		DVU3012	0.29	-1.2
3,125,561	-		DVU3012	0.29	+0.2
3,125,565	+		DVU3012	0.29	-0.4
3,125,568	-		DVU3012	0.30	-0.5
3,125,655	+		DVU3012	0.34	-1.6
3,125,660	+		DVU3012	0.35	-0.2
3,125,699	-		DVU3012	0.37	-1.4
3,125,712	-		DVU3012	0.38	+0.2
3,125,714	+		DVU3012	0.38	-0.2
3,125,733	+		DVU3012	0.39	+0.3
3,125,787	-		DVU3012	0.42	+0.3
3,125,862	+		DVU3012	0.46	-0.5